G400530


Basic Information

Item Value
gene id G400530
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000258
NCBI id null
chromosome length 191677
location 119312 ~ 122131 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU459788
TTTGGTATAAAAGGCACATTCAGGAGACGTACTGATTAGTCACATGTGACGAACACGTAAAAGAAAACAGAAGAAACAGAAAAGAAGAAAGGATTGATCCATGATGAAATGTTTTCACTCAATTTTCACTCGGCTAAATCTAATTACTGCCATTTCTTGAGTTAGCACATTAAATATCACAAACACTAGTTTAACACAAGCATAGACTTAAAAACCGATTCAGTTTAATCTATTCTCCCACACAAATCTCTTAAGGCAACTGAAAAAACAAACCCGAAAATAAAAGGCAAAAAACTTGTGTGCGGTTCACGTGATGGGAACGTCCATCGGCTCTGTATTTACACTGACATCCAGGACTATGAACAAGCAATAAATTAGTCATCTGCAAGCCAACTATCAGATAAAAACTGTCTTTACATGACGATGATTCTTACCATAATGCATAAAATCAGCTTTACACACAGAGTAAAAGTCAACACTCACTTAAATCATGTAATAAAGGAATGACATGCTAAAATCACGTAGATATTTAACAAAATGCAAAGGATCAGCCAGGACTCCTGACAAGCGTTAAACAAGACCCATCAGATCAGGTTAAACCATCTAAAATGTCAATAATGTCCTTGAGATTCCCATTCAAATCAATAAAATCAAGATATTGCATCATATTTACCGAGCCAACCGTGTTTCTGTACCCAGTCAAGCATTTCAGGAGAATCAGAGGTTATCATCTCATCTAAAGTACATGTAATAATTTCACCGTGTGACATCCATTGAAAATGCCGGTCATGCCTCTCAAATCTAACGGGCGAAACGTCTTTCTGGACACTGAACAGTGGACGACGTCTCTGTCTGTGAGTGTTGAGGTATGTTTGTTTCCTAGAGCTCGTCCCGGGCCGTGCTGTCCAGCGGCGACTGCAGGACGTCTGAGTTCTGCGCCTCGCTGCTCAGCTCCTCCTGCTCGCGGCTCTTGCGCGACCGCGCCCGGTCCCAGTCGGTGCGGACCGTCTCGTTGTCCCAGACGGTGGAGGTCTCCGTGTCGCTGATGTAGCCCGGGTCGCCCGTGTAGTGCGTGGGGTAAACCAGCAGCGGCTCGGCCGAGAACGCCCGCAGGTCACGCCGCTCGAAGTGAGACATGTACTCCTCGATGGGGTGTTTGTTGTACATGACGGGCAGAAACTCGTCCACCGGCAGCATCTTCTTCAGCGGTTCGGCCCGCAGCAGCTTCTGAGCGCCGCGTAACGAGATCATGTATCCCAGCGTCCAGTAGGAATAATCGGCCTCCACCAGGTTGTGGATTCTGGGAACAGATTTCTCCTGATGGTCCACCTGCATCCTCTTCCGTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU459788 True 1348 lncRNA 0.46 2 119312 122131

Neighbor

gene id symbol gene type direction distance location
CI01000258_00096312_00110058 NA coding upstream 8155 96312 ~ 111157 (+)
CI01000258_00045044_00048458 NA coding upstream 70854 45044 ~ 48458 (+)
CI01000258_00042250_00044020 NA coding upstream 74875 42250 ~ 44437 (+)
CI01000258_00038193_00041078 NA coding upstream 77988 37596 ~ 41451 (+)
CI01000258_00028166_00032821 NA coding upstream 85691 27921 ~ 33621 (+)
CI01000258_00137907_00154325 NA coding downstream 13615 135746 ~ 154356 (+)
G400561 NA non-coding upstream 6272 111265 ~ 113040 (+)
G400539 NA non-coding upstream 55801 44785 ~ 63511 (+)
G400544 NA non-coding upstream 64048 54784 ~ 55264 (+)
G400521 NA non-coding upstream 75727 41355 ~ 43226 (+)
G400526 NA non-coding upstream 79009 14399 ~ 40303 (+)
G400533 NA other downstream 34318 156449 ~ 158626 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005360 NA coding CM030140.1 CM030140.1 22061733 ~ 22078827 (-)