XLOC_012340 (slc35f4)


Basic Information

Item Value
gene id XLOC_012340
gene name slc35f4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44502707 ~ 44584938 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024270
TGCCCGTGCGGAGGTAAAATGAGCAGCCCGGAGATCCAGGATTCGGGAGAGGAGCCCTGCTTTCGCCTGGAGCCCCTACCGGGCAAGAGCCCGCACCTAACGGGCAAGGCGTCTCCGCAGGTGACCAGCCGCTGGGATGCGCCTCAAGTGACGGCCAACGGGCTGCATGACATTGAGGATCGGATTTTACGAATCACCGGCTACTACGGCTATAACCCCGGATACTCCAGCCACAGAAGAGAGGAGGGCTCAGATTCGCATGCAGAGACTCCAGTCAGTGAAACAAGTGGAGAGGCCACTGCATGTCAAACCTGCGCCAACACAGTGCTCAAGGTGCTGGGGGGCTTGCTGCTGGTGCTGTGTGTCTCCTCGTCCTGGGTGGGCACCACACAGGTGGTCCAGCTTACTTTCAAATCGTTTTCCTGTCCCTTTTTCATCACATGGTTCAGCACCAACTGGAACATTCTATTCTTCCCCCTCTACTACTCCGGGCATGTGGCTACCACCAGAGAAAAACAGACACCCATTCAGAAATTCAGGGAATGTAGCAGATTGTTTGGTGAGGATGGCATGTCTCTGAAGGTGTTTCTTAAGAGGACGGCACCATTCTCCATCTTGTGGACACTGACTAACTACCTGTACCTGTTAGCTCTGAGAAAACTAACCGCCACAGATGTCTCAGCACTCTACTGTTGCCACAAGGCCTTTGTCTTCCTCCTGTCATGGATCGTCCTCAAAGATCGTTTCATGGGTGTGCGGATTGTTGCTGCCATCATGGCTATCACAGGAATTGTGATGATGGCGTATGCTGATGGTTTCCATGGAGATTCCTTTATGGGTGTGGCCTTAGCCGTTGGCTCCGCCTCCACTTCTGCGCTCTACAAGGTGCTGTTTAAGATGTTCCTCGGCAGTGCCAATTTGGGCGAGGCTGCTCATTTCTTCTCAACAATGGGCTTTTTCAACCTCATCTTCATTTCCTGTGTTCCCCTCATCCTGTACTTCACCAGAGTGGAGCACTGGGGATCCCTCTCCTCTTTACCCTGGGGTTACCTCTGCGGGGTGGCTGGCCTTTGGCTAGtATTTAACATCCTGGTCAATGTAGGAGTGGTGCTCACATATCCTATCCTCATATCCATTGGGACGTTACTCAGTGTTCCAGGCAATGCAGCTATTGATGTGCTGAAGCATGAGGTCATCTTCAGCGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGGcttcctgctgctgctgctccctGAGGAGTGGGACACGGTTACCCTGCGCTTCCTCACCACCCTGGCCGACAAGAAGACGGAGGAGCATGGAGAAGAGCTCACAGAATCCAGCGTACACACGCGCAGCCGAAGTAGAGCCAACGGTGCCGTATCCATTCCCTTGGCATGA
>TCONS_00024271
GCGCTGAGCAAGTTTCACACAACCCTGAGCGACTCCTCAAAGCAACGTGTGCTGGAATTTGACTCGGGTGATGCTCTCAACAGCGGGTTTCGCATGTTTATCGCTTGTGACCTGAAAGCTGCCGTTTTGCCCGTGCGGAGGTAAAATGAGCAGCCCGGAGATCCAGGATTCGGGAGAGGAGCCCTGCTTTCGCCTGGAGCCCCTACCGGGCAAGAGCCCGCACCTAACGGGCAAGGCGTCTCCGCAGGTGACCAGCCGCTGGGATGCGCCTCAAGTGACGGCCAACGGGCTGCATGACATTGAGGATCGGATTTTACGAATCACCGGCTACTACGGCTATAACCCCGGATACTCCAGCCACAGAAGAGAGGAGGGCTCAGATTCGCATGCAGAGACTCCAGTCAGTGAAACAAGTGGAGAGGCCACTGCATGTCAAACCTGCGCCAACACAGTGCTCAAGGTGCTGGGGGGCTTGCTGCTGGTGCTGTGTGTCTCCTCGTCCTGGGTGGGCACCACACAGGTGGTCCAGCTTACTTTCAAATCGTTTTCCTGTCCCTTTTTCATCACATGGTTCAGCACCAACTGGAACATTCTATTCTTCCCCCTCTACTACTCCGGGCATGTGGCTACCACCAGAGAAAAACAGACACCCATTCAGAAATTCAGGGAATGTAGCAGATTGTTTGGTGAGGATGGCATGTCTCTGAAGGTGTTTCTTAAGAGGACGGCACCATTCTCCATCTTGTGGACACTGACTAACTACCTGTACCTGTTAGCTCTGAGAAAACTAACCGCCACAGATGTCTCAGCACTCTACTGTTGCCACAAGGCCTTTGTCTTCCTCCTGTCATGGATCGTCCTCAAAGATCGTTTCATGGGTGTGCGGATTGTTGCTGCCATCATGGCTATCACAGGAATTGTGATGATGGCGTATGCTGATGGTTTCCATGGAGATTCCTTTATGGGTGTGGCCTTAGCCGTTGGCTCCGCCTCCACTTCTGCGCTCTACAAGGTCAGTGCTGTTCATGCTCAGCTGAAAATACTGATTCCCAGAAGACCCTTGATGACCATTAAGACTCCTTTAGTATTGGTATGCTTTCCTTCAAAACCTCTTTGTACCACTCAGGTGCTGTTTAAGATGTTCCTCGGCAGTGCCAATTTGGGCGAGGCTGCTCATTTCTTCTCAACAATGGGCTTTTTCAACCTCATCTTCATTTCCTGTGTTCCCCTCATCCTGTACTTCACCAGAGTGGAGCACTGGGGATCCCTCTCCTCTTTACCCTGGGGTTACCTCTGCGGGGTGGCTGGCCTTTGGCTAGtATTTAACATCCTGGTCAATGTAGGAGTGGTGCTCACATATCCTATCCTCATATCCATTGGGACGTTACTCAGTGTTCCAGGCAATGCAGCTATTGATGTGCTGAAGCATGAGGTCATCTTCAGCGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGGcttcctgctgctgctgctccctGAGGAGTGGGACACGGTTACCCTGCGCTTCCTCACCACCCTGGCCGACAAGAAGACGGAGGAGCATGGAGAAGAGCTCACAGAATCCAGCGTACACACGCGCAGCCGAAGTAGAGCCAACGGTGCCGTATCCATTCCCTTGGCATGA

Function

symbol description
slc35f4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-49 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4).

Ensembl:

ensembl_id ENSDARG00000103124

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024270 False 1410 mRNA 0.54 7 44502707 44584811
TCONS_00024271 True 1651 mRNA 0.53 6 44502707 44584938

Neighbor

gene id symbol gene type direction distance location
XLOC_012339 NA coding downstream 4082 44482087 ~ 44498625 (-)
XLOC_012338 exoc5 coding downstream 61875 44413770 ~ 44440832 (-)
XLOC_012336 NA coding downstream 93084 44354824 ~ 44409623 (-)
XLOC_012337 BX548045.3 coding downstream 99994 44399360 ~ 44402713 (-)
XLOC_012335 otx2b coding downstream 252987 44244659 ~ 44249720 (-)
XLOC_012341 NA coding upstream 101200 44686138 ~ 44688930 (-)
XLOC_012342 zdhhc22 coding upstream 182787 44767725 ~ 44776224 (-)
XLOC_012343 ngb coding upstream 376970 44961908 ~ 44968407 (-)
XLOC_012344 NA coding upstream 382018 44966956 ~ 44974388 (-)
XLOC_012345 fam161b coding upstream 395899 44980837 ~ 45009782 (-)
XLOC_012334 NA non-coding downstream 386630 44070341 ~ 44116077 (-)
XLOC_012333 BX511267.1 non-coding downstream 443780 44058811 ~ 44058927 (-)
XLOC_012332 NA non-coding downstream 491825 44004439 ~ 44010882 (-)
XLOC_012353 NA non-coding upstream 864131 45449069 ~ 45452814 (-)
XLOC_012354 NA non-coding upstream 899706 45484644 ~ 45485472 (-)
XLOC_012359 AL953848.2 non-coding upstream 1976202 46561140 ~ 46722470 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001945 NA misc CM030143.1 CM030143.1 20340425 ~ 20347505 (-)