XLOC_012341


Basic Information

Item Value
gene id XLOC_012341
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 44686138 ~ 44688930 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024986
AACACATCAAATACCtttatgggtcacactttactttaagagcaGTAGTGTTTGCCACTTATCTGCATTATAAAAGACAACATCCAGATGCAGTGTATCAGATGTAAGGATCAGCTCTCGTGCTGCTGTTATTATCAGAAATGTTTTAAGGGTGATCTGGACTCTATATTCCCCATGGCCCTTCATTTATCCCAGATTCTAAAGGGAGAACGCATCTACATTAAAGCTATCCATTCATCAATGTTTAGAAGGTCCGATTTCCTCCGAGGAAGGTTCATTTTACACATGGGAACACTAATCTGAGTTGACATGATAAGCACTGGAACAAAATTGCCGGATATCGTGAAGCTTAAAGGTATTCAGCAATCTCCATTACCGTTGTGTGTTTTGAAAATTGTCATTACTGTAGACCATTTGGCCAGCACCTCGACCGGATATTACATGAATCAACTTCCTGCAATTCCTGCACTCTGTCTGTCCACCTGTTGTTTCTTACATAAATCTGAATAGAAGATTGGGCTACATGGAAGTGGCTCAGTCTCAAGCAAAATCCCCTCTGTATTGCTTTGATATTAAGGTAATTATCGATTTGTATCACTTCCTATTTACGAGACTGAGATGACAGAGTTCCTCACGTCTTAAAAGCTAACAGGTGTTAAACGGTTTCCTCAGCATTCCTCTCTATTGTATGGGCTTgtgatttttgtgtttatttaggaAGTTGCGTTTAGCACGTGCAAGTCTGACGTGCTGTTATTGTCTGACAATTATGCGTCACATGGCGGCAGATTTGGCATAAGGACACTTAACAGGTGCTTGTAAGGCATTTGCTATTGTTCTTGGCACCTTTTGTCACTTCCTGAAAAGtggttttactttaaataaagca
>TCONS_00024987
ccagtttgtccagtgctCGACATGTACGCCTGTGGACTTGAGATTCAGAGCAGAGTTGACTACGACCACGGgattcgagtccagtgaagaacggttccagaaagcagagcaGTAGTGTTTGCCACTTATCTGCATTATAAAAGACAACATCCAGATGCAGTGTATCAGATGTAAGGATCAGCTCTCGTGCTGCTGTTATTATCAGAAATGTTTTAAGGGTGATCTGGACTCTATATTCCCCATGGCCCTTCATTTATCCCAGATTCTAAAGGGAGAACGCATCTACATTAAAGCTATCCATTCATCAATGTTTAGAAGGTCCGATTTCCTCCGAGGAAGGTTCATTTTACACATGGGAACACTAATCTGAGTTGACATGATAAGCACTGGAACAAAATTGCCGGATATCGTGAAGCTTAAAGGTATTCAGCAATCTCCATTACCGTTGTGTGTTTTGAAAATTGTCATTACTGTAGACCATTTGGCCAGCACCTCGACCGGATATTACATGAATCAACTTCCTGCAATTCCTGCACTCTGTCTGTCCACCTGTTGTTTCTTACATAAATCTGAATAGAAGATTGGGCTACATGGAAGTGGCTCAGTCTCAAGCAAAATCCCCTCTGTATTGCTTTGATATTAAGGTAATTATCGATTTGTATCACTTCCTATTTACGAGACTGAGATGACAGAGTTCCTCACGTCTTAAAAGCTAACAGGTGTTAAACGGTTTCCTCAGCATTCCTCTCTATTGTATGGGCTTgtgatttttgtgtttatttaggaAGTTGCGTTTAGCACGTGCAAGTCTGACGTGCTGTTATTGTCTGACAATTATGCGTCACATGGCGGCAGATTTGGCATAAGGACACTTAACAGGTGCTTGTAAGGCATTTGCTATTGTTCTTGGCACCTTTTGTCACTTCCTGAAAAGtggttttactttaaataaagca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024986 False 889 lncRNA 0.40 2 44686138 44687306
TCONS_00024987 True 956 lncRNA 0.42 2 44686138 44688930

Neighbor

gene id symbol gene type direction distance location
XLOC_012340 slc35f4 coding downstream 101200 44502707 ~ 44584938 (-)
XLOC_012339 NA coding downstream 187513 44482087 ~ 44498625 (-)
XLOC_012338 exoc5 coding downstream 245306 44413770 ~ 44440832 (-)
XLOC_012336 NA coding downstream 276515 44354824 ~ 44409623 (-)
XLOC_012337 BX548045.3 coding downstream 283425 44399360 ~ 44402713 (-)
XLOC_012342 zdhhc22 coding upstream 78795 44767725 ~ 44776224 (-)
XLOC_012343 ngb coding upstream 272978 44961908 ~ 44968407 (-)
XLOC_012344 NA coding upstream 278026 44966956 ~ 44974388 (-)
XLOC_012345 fam161b coding upstream 291907 44980837 ~ 45009782 (-)
XLOC_012346 entpd5a coding upstream 341477 45030407 ~ 45040813 (-)
XLOC_012334 NA non-coding downstream 570061 44070341 ~ 44116077 (-)
XLOC_012333 BX511267.1 non-coding downstream 627211 44058811 ~ 44058927 (-)
XLOC_012332 NA non-coding downstream 675256 44004439 ~ 44010882 (-)
XLOC_012353 NA non-coding upstream 760139 45449069 ~ 45452814 (-)
XLOC_012354 NA non-coding upstream 795714 45484644 ~ 45485472 (-)
XLOC_012359 AL953848.2 non-coding upstream 1872210 46561140 ~ 46722470 (-)
XLOC_012360 NA non-coding upstream 1949334 46638264 ~ 46638723 (-)

Expression


Co-expression Network