CI01000299_04480751_04492829


Basic Information

Item Value
gene id CI01000299_04480751_04492829
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4480553 ~ 4493116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04480751_04492829.mRNA
CTTTAAATCTCTAGGAAGAGGGAAATATCCTCATTGCATTTCTCAAGCCAGCAAATAAGGTTCACAAACATTTTCCCTGAAGGTATACACATTTGTCACACAGTCAAGCAGAGGTTCTCTTGTAGGCTTAATTTCTGTGAAGTATATTTCACGTTAAACCTTCCTTTCTGCCACAAGAGGGCATGAAAGATCATGATAATGGAGCCCAACCTACAGACCCGAGACAGACAACAGTGCTCTATTATACGCCTTCAGCAGTATCACAGATGCCTCCTCTGTAGATTATATATTTCCACAAAACCAAAAGAGAAGAAAAGCAGTGTGAAGATGTTCTTCAGACATTCACATATTCTCTGGATCCTGATCATCTGCGAAACTGTTTCAGGTGATTATGTGAAAGCAGTGAAGAGTGAAACTACGTTCACTCCAGTGACTGGATCTCTTCCTCCTGGCACCACCAGCATTATATGGAAACACCGAAACAATGCTGGGGTTGTTGTGAAGGTCATTGAATGGGACCGGGATGATGGCAGCACTGAAATTCCCAACGCTAATTTCAAATCCCACGCAAGCCTGAACAAAGGCACTGGAGAACTCACTTTAAGAAATTTACAGCTCAAACACACTGGAGTTTACACCATCGACATCAACAGTAAAGAGCAAAGAAAACAGTTCGCCCTGACTGTTATAGAGCCTGTCAACAAACCTCATATTACAGAAGAGTGCATACTAGGAGATGCTCCTATATGTACCTTGATTTGTGATGGTGGTGATGGCCCCTCTGAAACTACAATCACCTGGGAAAACTCAGCTGGAGAGACACAAGATCGTAATGTATGGGTAATAACAGTGACCAAGAGCAGTAACCCAGAAAACTTCTACACGTGCACACTAAAGAACGCAGTGAGTGAGGAGACCAGTGATCCGGTGTATGAGAGAGATCTGTTTAATGGTTGTGCTGCTGCTAGCTTCGGACACTACCTTCTTACTCCTGTCAAAGCACTGAGGTCGTCCAATCAGATGATCCTCGATGTTGAAAGATCCATGTTAAAAAATAAAGGTGAAGGTGTGTTTAAAGCAGTGGGTGAACAAGTTTCTTTTCGTCCAGACAAACCTCTTCCTTCTCCTGTCACCAGCATTATCTGGAAACACATAAACAATGATGGAACTGTTGTCAAGGCGATTGAATGGGATGAAGGAGAAATTCTAATCCCGAATCCGAGATTCAAAGGAATCACAACTGTTGATGAGAAGACTGGACAAATTAATATAACTAATTTAAATTACAGCCATAGTGGAGTTTATACCATTGACATCAACAGTAAAGAGCAGGAACAGAGATTCACCTTGACTGTTATGGAGCGGGTCCCCAAACCTGTGATAGAACCAGAGATGATCAAAGATTACACTGTAGTCGTGAATTTAACATGCAAGTACAATGAAACGATCATCTGGAAGAATTCTACTGGACAAATACTGCCGGGTTTAGCGCTCCATCCAAAAGGAGAGTTTATCACAGTTAAAAAAACAGCAAATGAGAGCAACTTCTACACCTGTACACTGAAGAACACAGTGAGTGAGGAGACCAGTGATCGGGTCTATGAGAGAGATCTGTTTAAAGTTCTGCTCATCATGGACTCTATAAATCTCAGCTTGACTGAATCATCTGGAGCTCTAAACCGTCTGTGCCTTCATGAATCTGACTGTTGTTTTTTGATCTTTCGGTCTGCTGGGCCGCACAGACGGTGTCAGAACTTCATCCTCAGGTTATGAATCTATGAATCTACTGTTAAATATGCAGATACTTTGTTTTCAAGGAGGGACGAGATGAGGCACCAAACAGAGAGTTTTGCATTTGGGGTGTTTAGTAATTGTGTAGAAAAATTTCTGTTATGTTAAGAAAAAACATAAAATGTATATACATGACAGTAAATTTTACGCAAAACATTTTGCTCAATTTTTCTTTTGTAGTGGAATATAGAGAAGGTTTTTTATTATATTTAATTTAACCAAACTCATCACAGCCAAAATGTGATGAGTTTGATGCAGGACATGTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04480751_04492829.mRNA False 2060 mRNA 0.41 8 4480553 4493116

Neighbor

gene id symbol gene type direction distance location
CI01000299_04472181_04474247 NA coding upstream 6282 4470956 ~ 4474271 (+)
CI01000299_04269257_04269673 NA coding upstream 210788 4268467 ~ 4269765 (+)
CI01000299_04259743_04263032 ENG1B, EN1 coding upstream 217060 4258921 ~ 4263493 (+)
CI01000299_04131136_04133439 PCNP coding upstream 346751 4131060 ~ 4133941 (+)
CI01000299_04122601_04126314 MLE3, MYLZ3, MYL1 coding upstream 354172 4122601 ~ 4126381 (+)
CI01000299_04496757_04504238 NA coding downstream 3270 4496386 ~ 4504483 (+)
CI01000299_04513358_04524537 NA coding downstream 20242 4513358 ~ 4526677 (+)
CI01000299_04532498_04539703 NA coding downstream 38982 4532098 ~ 4539919 (+)
CI01000299_04554181_04557794 NA coding downstream 60995 4554111 ~ 4557840 (+)
CI01000299_04703290_04704365 NA coding downstream 209955 4703071 ~ 4704780 (+)
G405932 NA non-coding upstream 24868 4455446 ~ 4455685 (+)
G405931 NA non-coding upstream 26684 4453592 ~ 4453869 (+)
G405876 NA non-coding upstream 31558 4418304 ~ 4448995 (+)
G405912 NA non-coding upstream 65542 4414792 ~ 4415011 (+)
G405910 NA non-coding upstream 77247 4400579 ~ 4403306 (+)
G405865 NA non-coding downstream 156820 4649936 ~ 4665044 (+)
G405881 NA non-coding downstream 165225 4658341 ~ 4663395 (+)
G405966 NA non-coding downstream 178099 4671215 ~ 4671482 (+)
G405967 NA non-coding downstream 178409 4671525 ~ 4671895 (+)
G405842 NA other upstream 160412 4295533 ~ 4320141 (+)
G405609 NA other upstream 1325379 3154597 ~ 3155174 (+)
G403972 NA other upstream 3874203 604870 ~ 606350 (+)
G403609 NA other upstream 4069765 364139 ~ 410788 (+)
G406096 NA other downstream 431346 4924462 ~ 4927844 (+)
G406244 NA other downstream 878065 5371181 ~ 5373579 (+)
G406161 NA other downstream 1744722 6237838 ~ 6300508 (+)
CI01000299_04736806_04740333 CLIC6 coding downstream 230889 4736806 ~ 4740975 (+)
G406023 NA non-coding downstream 184978 4690895 ~ 4766223 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G119692 NA non-coding CI01000021 null 6733328 ~ 6733696 (+)
eurasian perch (Perca fluviatilis) G100868 NA non-coding NC_053120.1 CM020917.1 37203373 ~ 37203685 (-)