CI01000299_05128395_05192154


Basic Information

Item Value
gene id CI01000299_05128395_05192154
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5128348 ~ 5192994 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05128395_05192154.mRNA
GTATAAAAAGGCTCTTTAAGTGTCCGGGCATTTTGAAGGCTCTAATAATGGCCTCGACCATCAGCCTCGTCAGCTGTTCACCCGTCCTCTATCCAGCACGCTCAAACGTGAACTCTCTAGTGTGGTTTTTGGACCTTAACGGTTTTTTCAAACTGGAAATCAAGTCTTTTTGGGTTTTGAGTCTTTCAGATGCTCCAGGAGATAATGATGATCAGGATATATTGGAGGAAGCTCATCGATTGATTCAGAATCGATGTTCAGAAAGGGATGAGGAAGATACAAATGCCTTTCCCCCGTTCGCTCGATCCTCTCTGGAGGAGGTTTGTCGACTGAAGTTAAGGCGGTTTGAGGTCATCCCACCGTCTTCAAACAGCTTCACTAACTCGTCTTCAGGTACTTCAATTAAACCTCGTCCTTGTAATAATATCTCATTTAGAGTTCATGCAGAAGTTTTATCATTATTCTATTCTCAGAATACACATGAAACGAACAGATCACAGGAAACAGGGATCTCGGGGAGGAAGTTACTGAGCGTGTCCCTGTGGACGCTGTACCGCGGGTCCGTCTTAAAGTTGCAGGATTGGTTAATTAAACAGAGATCTTCCGCCCACCGTGGTCTCCGTCTGTGTCTCAGTCGGTGTAACGGGCTGCAGATAGTATTTTCACCACAAACTTCGAATTACTCTAACATTCTAGGAGTTAAAAGTCATTGTTATGGGGCGATGCCCAGAGTTGAAGAGATGCTAGCCAGCCATCTCTCCCCTGAATTTGCATCGTCCCTTATAGCCCCGACGTTGCCCACCAAGCCGGTCAGAACTACATCAGCACTGGACGCAGAGGTTTACAGCGAGTGTATGATCCAGTCACTCGACAGTGCTTCACCGATGTTACTGGGTCATTCCCTCGATGCTGCGGCCCTCTAAGGAGGGTTTCTCAGCAGTTAGTTTGGTTGTTACCTGCTGGTTCGCCGCAGCAGGGTGACTGCACCAGAGACCAGCCTCAAGATGAGGAAAAAAAAAGGGTTACAGAATTCAGTTCGGTTCTCGTCCGCCCAGTTTCAACAGGGTCCTATTCACAGTAGTAGGCCCGAGCTGGCTCTGATAATGGAGCAAGAAGTGAAGCTTTGTTAGAGAAGGAGAACATGTTCCTCTTCCCAACACAGAATCAGGGTTTTATAGCCGTTGTTTCATTGATCCAAAAAAGGATGGGGGTTACATCTGGTTTTAGATCTACGTCTGCTAAATAGTTCAGTGAGCAAGCTGAAGTTCACAATGCTGACATTAAAGCAGATTGTATCTCAAATCAGGTCTGAAGACTGGTTTGTCACGATAGATCTGAAGGACACTTACTTACACTTTTCCATCCTTCCACAACACAGGAAGTTCCTGAGGTTCGCTTTCGGGGGTGAAGCGTACCAATATTGGGTTCTTCCCTTCAGCCTAGCTTTATCACCCCGCTCGTTCATGAAATGTAACTCTGTTGTTGACAAGAACAACAAGTTTAGCTAAGAAGTTAAGCTGCATGATTTACAGATGGCATATTTCAAGAAATCACCCAAAAATGAGTTCTGTTGTCATTTACTCTCGCTCAAACCACGTTTCAGCGTGAACATCCTGCTAATCATCTCCTTTTGTGTTCCACTGAAGAAGGAAAGTCATCTGAAACATGATGACAGAATTATGTGCTGCCTGTGATACAACATCAAACTCAATCAAACAGATCCATCAGTGGCCAGACTGTTATTCATAGAGGAAAAGATGGAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05128395_05192154.mRNA True 1763 mRNA 0.45 7 5128348 5192994

Neighbor

gene id symbol gene type direction distance location
CI01000299_04906697_04907091 NA coding upstream 218275 4906697 ~ 4910073 (+)
CI01000299_04892566_04900169 NA coding upstream 227812 4890391 ~ 4900536 (+)
CI01000299_04864582_04885052 RUNX1 coding upstream 242963 4864192 ~ 4885385 (+)
CI01000299_04819297_04829755 NA coding upstream 298361 4818685 ~ 4829987 (+)
CI01000299_04736806_04740333 CLIC6 coding upstream 387373 4736806 ~ 4740975 (+)
CI01000299_05254419_05314859 NA coding downstream 61425 5254419 ~ 5316243 (+)
CI01000299_05331367_05364944 NA coding downstream 138207 5331201 ~ 5364977 (+)
CI01000299_05392812_05418070 GART coding downstream 199698 5392692 ~ 5418352 (+)
CI01000299_05619817_05725510 NA coding downstream 426710 5619704 ~ 5727439 (+)
CI01000299_05732790_05737401 N6AMT1 coding downstream 539796 5732790 ~ 5737802 (+)
G406101 NA non-coding upstream 171992 4956150 ~ 4956356 (+)
G405999 NA non-coding upstream 191900 4934315 ~ 4936448 (+)
G405994 NA non-coding upstream 194413 4818488 ~ 4933935 (+)
G406023 NA non-coding upstream 362125 4690895 ~ 4766223 (+)
G406134 NA non-coding downstream 63745 5256739 ~ 5257212 (+)
G406203 NA non-coding downstream 119174 5312168 ~ 5745426 (+)
G405992 NA non-coding downstream 183273 5376267 ~ 5379015 (+)
G405987 NA non-coding downstream 231595 5424589 ~ 5429645 (+)
G406315 NA non-coding downstream 359648 5552642 ~ 5554868 (+)
G406096 NA other upstream 200504 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 423723 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 622431 4480553 ~ 4493116 (+)
G405842 NA other upstream 808207 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 994407 4131060 ~ 4133941 (+)
G406244 NA other downstream 178187 5371181 ~ 5373579 (+)
G406161 NA other downstream 1044844 6237838 ~ 6300508 (+)

Expression


Co-expression Network