Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000299_05392812_05418070 |
| gene name | GART |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5392692 ~ 5418352 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| gart | Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000299_05392812_05418070.mRNA | True | 3552 | mRNA | 0.57 | 21 | 5392692 | 5418352 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05331367_05364944 | NA | coding | upstream | 27715 | 5331201 ~ 5364977 (+) |
| CI01000299_05254419_05314859 | NA | coding | upstream | 76449 | 5254419 ~ 5316243 (+) |
| CI01000299_05128395_05192154 | NA | coding | upstream | 199698 | 5128348 ~ 5192994 (+) |
| CI01000299_04906697_04907091 | NA | coding | upstream | 482619 | 4906697 ~ 4910073 (+) |
| CI01000299_04892566_04900169 | NA | coding | upstream | 492156 | 4890391 ~ 4900536 (+) |
| CI01000299_05619817_05725510 | NA | coding | downstream | 201352 | 5619704 ~ 5727439 (+) |
| CI01000299_05732790_05737401 | N6AMT1 | coding | downstream | 314438 | 5732790 ~ 5737802 (+) |
| CI01000299_05778912_05790662 | NA | coding | downstream | 360211 | 5778563 ~ 5790755 (+) |
| CI01000299_05799020_05801977 | NA | coding | downstream | 380590 | 5798942 ~ 5802114 (+) |
| CI01000299_05816534_05817445 | NA | coding | downstream | 398182 | 5816534 ~ 5817456 (+) |
| G405992 | NA | non-coding | upstream | 13677 | 5376267 ~ 5379015 (+) |
| G406134 | NA | non-coding | upstream | 135480 | 5256739 ~ 5257212 (+) |
| G406101 | NA | non-coding | upstream | 436336 | 4956150 ~ 4956356 (+) |
| G405999 | NA | non-coding | upstream | 456244 | 4934315 ~ 4936448 (+) |
| G405994 | NA | non-coding | upstream | 458757 | 4818488 ~ 4933935 (+) |
| G405987 | NA | non-coding | downstream | 6237 | 5424589 ~ 5429645 (+) |
| G406315 | NA | non-coding | downstream | 134290 | 5552642 ~ 5554868 (+) |
| G406354 | NA | non-coding | downstream | 216396 | 5634748 ~ 5639866 (+) |
| G406189 | NA | non-coding | downstream | 338425 | 5756777 ~ 5827969 (+) |
| G406164 | NA | non-coding | downstream | 340872 | 5759224 ~ 5762316 (+) |
| G406244 | NA | other | upstream | 19113 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 464848 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 688067 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 886775 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 1072551 | 4295533 ~ 4320141 (+) |
| G406161 | NA | other | downstream | 819486 | 6237838 ~ 6300508 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_000928 | gart | coding | NC_007112.7 | CM002885.2 | 960209 ~ 999556 (-) |
