CI01000299_06281861_06289368


Basic Information

Item Value
gene id CI01000299_06281861_06289368
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6279383 ~ 6290025 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06281861_06289368.mRNA
AGACGGAACCCTTAAAGATGAATCACTTGTTGTTTGGATAAAAGCATCTGCTAAAAGAATAAATGTAAATAATCATGGACATTATTGAGACATTAAACTAGTCATGAAAGTGAAACGCTTCTCAAACAAGAACAAATGTAGTGCGGGGCTTGATTTTGTCTGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCGCCCTCATCATCAGAGAAGTCACTGCAAAAGGGAGAAGTTATTCTGATTCAAAATTACGAGGAACATGAATTTAAAACAATAATGATGTGCACCGATGAATCATTAAGAATAAACACTGCAATATTTGTTCACTTTTGATTTGTATCTTTTGCACTATATTCACATTTTCTAAAGTTTTGTGTGAGAAACAGCCAAAGTTATTCCCTCATAATCCTCCGCTTGGCTGCGGTTCTTCAATCTCATTTGTGTGGAGAACATGAAACTGAAATCTCACATGTCGTAAGTGTAAACGGCACTACATTTGTCCTGCGGTGAGTTTCTCCTCCCCCTGTTCCTCTGGCTCTCTCTCCCTCCCAGCGCTCAGTTCATTGACCTTCTGTTTTCTGAACGATCCTCAAACGTGAAAGAGCTCAACGCTGACAAGCGAATATGTCTTGGGTCTTCTGGAACTTTCTGTGCTTGTTTCTAATACACTGTGTTTGCTCAGAAGTCTTCCTCCACACTCGAGATGCCAGTCAGATCCTGAGCCGCCGCCGCCGCGCAAACCAGGTGTTCGAGGAGTGGAAGCAGGGAAACATGGAGCGCGAGTGCATTGAGGAGCGCTGCAGTTACGAGGAGGCCAGAGAAATCTTCGAGGATGTTACAAAGACGGATGAGTTCTGGCACGTGTATATCGATGGAGACGCGTGTTTGTCACAGCCGTGTCTCAATGGTGGCAAGTGTAAAGATGCGATCGGGCCGTACACGTGTTTCTGTCAACAAGGGTTTAGGGGCTACAACTGTGAGATTGCTATTCCTCAGCTCTGTGAGAGTGAAAATGGGGGCTGTGATCATTTCTGCAGAGTGAAGGAGAAAGACGTCGTCTGTTCGTGTGCCAAAGGCTACGAGCTGGCCGATGATGGGAAGTCATGTCACTCTAATGAACCTTTCAAATGTGGCGTCATTCATCCTCCGAAGACCAGAAGAATCTTCATACACATGCCAAACATCACCAACAGTGAGACTGAAGAGGAGACTCACATTGAGACCACCGTCGAGTCTTTCATAGACGCCACAAACTCATCGGCCAATGAGACGAGCAGCATGTTCGGCCTCCACGAGCAGGACATCGCTAAAAAAGAGCAAGAGGAACCGATTTTACCTGAAACATCTGGAGGAATCACAAGAATCGTCAATGGTGTGGAATGTCCTCCTGGAGATTGTCCATGGCAGGCTCTTCTCATTAATGAAGACAACATCGGCTTCTGTGGCGGCACCATCCTGAACCAGTACTTCATCCTGTCGGCCGCTCACTGTATGAATCAGTCGCTCTACACCAGGGTGGTCTTAGGTGAGTTTGACACGCTGGTCAACGAGGGTCGTGAGGTCACCCACGACGTAGATGAGATTCTGATTCACAAGAAGTATATGGCGGACACCTACAACAACGATATCGCCCTCATTAAGCTCAGCAAGCCCATCACATTCACCAGATTCATCCTCCCCGCCTGCCTGCCGGAGAACGACTTCGCCGAGCGTGTGCTGATGCGTCAGGAGGAAGGTATGGTGAGCGGCTTCGGCCGTGTGCGCGAAGGCGGCCTTCAGTCCACCATCCTCCAGAAGCTAACGGTGCCGTACATCGACCGTGGCAAGTGCATAGAGTCCAGCAATTTCCAAATCTCCAATCACATGTTCTGTGCCGGATATGACCAGGAGGAAAAAGATGCGTGTCAGGGCGACAGCGGCGGGCCGCATGTGACGCGCTACAAAAACACGTGGTTTGTCACGGGCGTGGTGAGCTGGGGCGAGGGATGCGCCCGGAAGGGCAAGTACGGCGTCTACACGCAGGTCTCCAAGTACATCCGGTGGATCCAGAACGCCATGGCCAAAGTCATGCCAGAGATGAGAAATTCTATAAAAGCCAAAGCAAAGCGAGAGGTGCTTCAGAAGACGCCTGTACGAAGAGTCTGACAGGAAGTCAACGTGACTCAACAACGACACGCTCTTAATTCATGTTGATGATTTATCAGTGATGTTACCCCAGCAATCAAAAATATATTCTAAGAACCCATAAAGTTATAAGAACGTTATTTCTGAATGATCCCTGAACGTCCAGTTTTTTGGCTATGCAAATGTTAAGGGAACATTCCATTTTACAATTCTGGAAACATTCTGGGAACGTTACTTTTGAATGTTCCATGAATGTTCTGAAACAACTAGTAACATTTAGAAAGTGTTCCATGAACAATAAATAATGTTTTTGTGTTAACGTTTTGAGAACATTATTAAAGACCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACAACTAGTAACATTTAGAAAGTGTTCCATGAACAATAAATAATGTTTTTGTGTTAACGTTTTGAGAACATTATTAAAGACCAGATAACTCTGAACAAAAGTTTGTTCATGACTTTGAGAAAACCTTGCCAGAACGTTCTAACTTTCATCCTAATGACATTTACAGTTTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06281861_06289368.mRNA True 4656 mRNA 0.26 8 6279383 6290025

Neighbor

gene id symbol gene type direction distance location
CI01000299_06274590_06278765 PROZ coding downstream 251 6274427 ~ 6279132 (-)
CI01000299_06268189_06268676 NA coding downstream 9988 6268189 ~ 6269395 (-)
CI01000299_06257032_06266210 CUL4A coding downstream 13173 6255857 ~ 6266210 (-)
CI01000299_06242885_06246604 LAMP1 coding downstream 32779 6241996 ~ 6246604 (-)
CI01000299_06208641_06214104 TMCO3 coding downstream 65279 6208612 ~ 6214104 (-)
CI01000299_06291499_06294321 F7 coding upstream 524 6290549 ~ 6294875 (-)
CI01000299_06295715_06298755 F7 coding upstream 5588 6295613 ~ 6298775 (-)
CI01000299_06299968_06305021 NA coding upstream 8871 6298896 ~ 6305158 (-)
CI01000299_06306931_06307410 NA coding upstream 16075 6306100 ~ 6307410 (-)
CI01000299_06310939_06311125 NA coding upstream 20914 6310939 ~ 6311229 (-)
G407939 NA non-coding downstream 47108 6226412 ~ 6232275 (-)
G407923 NA non-coding downstream 57004 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 95848 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 133459 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 164893 6108478 ~ 6114490 (-)
G407986 NA non-coding upstream 99351 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 102019 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 127101 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 149496 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 150222 6440247 ~ 6440470 (-)
G407805 NA other downstream 443394 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 823275 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1350565 4913373 ~ 4927715 (-)
G407413 NA other downstream 1728662 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 241976 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000009 f10 coding NC_007112.7 CM002885.2 135903 ~ 142469 (+)