CI01000299_06291499_06294321 (F7)


Basic Information

Item Value
gene id CI01000299_06291499_06294321
gene name F7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6290549 ~ 6294875 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06291499_06294321.mRNA
ATTTTACTGTTAGTACTGGTTGAAAACGCTCTTTGTGAGACTTTTAAAGTCATCAAAAAGTAGTGTTTTTTTCTTCTCTATTGTGTCGTATATCTGAGTGAAACGCTTCACAAACAAGAACAAATGTAGGGCGGGGCTTAATTTGGTCCGTGAGGAATTGTTGTGGTTTGCTATTGGTGGATCTTATGTGAGTGACAGGTTGCCCCGCCCTCATCATCAGAGAAGAAATGCTGCAAGGAGGGGAAATTATTTTGATTCAATATTATGAGGCACACAAATTAAAAACAATAATAATGTGCACGGATAAATCATTTAGAATAAACACATAAACAAAGAATTGTCCATTTTGATTTCATGACTTTTAAAATAAAGCCTGGAGTGTATTTGGTCCAATAATCAGTTTCATTACTGAGTGAATCTCATGAACGCCTCACACAAGCTAAATACAACCAGCTGCCCTTTGCTCCCGGTCGATCGGCTAATTTCAGTCTCATCCGTGTCTCTCATCGGGATTCTGAGGAAACACTGGCCACGCGCGTGTCCGACAGGGAAACATGAACACTTGTGCTGTTGTGTTGGTGTGTGTCCTGATATTTCACGGATCCAGCGGTGTGTTTCTTGACAAAGATGACGCCAGTTCGGTTCTGCAGCGCGTCAGGCGCGCGAACTCCTTCCTCGAGGAGATGAAGGGCGGGAATCTCGAGCGCGAGTGCATCGAAGAAATCTGCGACTACGAGGAGGCGCGCGAGGTGTTCGAGGACGACACGAAGACGAAACTCTTTTGGTTGAGTTACTCCGCGAAGGAGCCCTGCTTGACCAATCCATGCAAGAACAACGGCACATGCGTTTATCTGGCCAACACCTACTACTGCCAGTGTCTGGAGGGGTTTGAGGGCAAATACTGTGAGAAGGGGTTTGAGGAGACGCTGAAGTGTCAGTATGTGAACGGAGGCTGTGAGCAGTTCTGCGACGCTTCCGGACCGAGACGCACGTGCAGCTGTGCCGCGGGATACGCACTCGGAGCTGATAGGACGTCTTGTGTTGCTCAAGTTGAATATCCATGTGGAAAGGTTCCGCTTCAGAACAACACAGTTCATTCTCAAAAACAGACCGTGGGTGGAATTCACTGTCCCAGAGGTCACTGTCCTTGGCAGGCGCTGATCGATTATAACGGTGAGAGTCTGTGTGGAGGGGCTCTTCTGGATGACAGCTGGGTCCTAACAGCTGCTCACTGCGTTCATCAGAAGGACATGAAGCGTTTGAAGGTTATCACAGGTGATCATGACCTGGATGTGATGGACGGCCCGGAGGAGGCGTATGATGTTGCTGGTGTGGTTATCCATGAGAACTATGACCCCATGTCACTGGATAGTGACCTGGCCCTCCTGAAGCTTCATGAAAAACTCAAGCGCTCTGTGTACACTGTGCCTGTTTGTTTGCCCACGGCCCAGCTGGCACAGATCGAGCTCGCTGCCGTCCGCTTCCACACGCTCAGCGGATGGGGCAAGCGAACCTCGGGGGACAACATCCATCCGTCAAAAGGCCTGAAATTCCCGTCGTCCGCCACTCTGCAGCGGCTGGCCGTCCCTCTGTTGCCCACAGCGCAGTGTGTGTCGAGCAGTGGCGTCAACATCACTGCCAACATGTTCTGTGCGGGTTACGTCGAGGGCGGTCACGAGTCCTGCAGAGGACATGACGGAAGTCCGCTCGTCACCCGCTACGAGGGAACGTCTTTCCTGACGGGCGTCGTGTCGTGGGGTAAAGGCTGCGATCAGCCGGGGTACTACGGGATTTACACCAAAGTGGCTAACTTCTTAAAATGGATTGAAATTGTTATGAAAACTGAGGGGCTGAATAATATCAGTGGATCTCCTGTTGAACAGTCCACTCACAATTAATGTCTTTACCAGAGGTTATACACTCTTGACAATAAAGGTTTCACAAGAATTGATCACTGAAAGGTTCTTAGGGAACCAAAAATGGTTGTTCTACGGCAGGGGTTTTCAAAGTCGAAGACAGTGGTCCTCAATTTTTAGACAATGTACACAATGGTGCCTTCCCACCCACCAATTTTTACTAATTTTCAATAGCGATCAGAGTGCGCGTTAATAACAGACTCTCATCTCATGTGCCTAATTACATTCGTCATCCATCAAAACTTTACTAGCGCGACAATGGTTTGCTTTATCCAACCGAGAGATGTAGTTTGTATATACTTATGTTCATGCAGCGGTACACTATTCCCTCCGCCATCTCTGATGAAATCGGCCAGGTTTTGTCTGCATTAGGGATGTTTTGTACTGACTGTTTGAATGTATTCGCTTACTGGATCCTTGGACTGAAAACTCTCCAGGAGGATCTGATCGAAAACAGAGTATTGATTCTGCTATAATGTATTGATTGAGGGGCTGTTTACGCGACACCATTTTCAACTAAAAATGGAAAACTTTTTATGTGTTTTGGCCGTTCATTTACATGACAACAGCATTTTGGGGGCCTGAAAATGCAAACTTTCAAAGTGCAAGTTTTTGAAAACAATACTGTTATCATCTCTGTGTAAACAACAAAAATGTGGATCTGTGAAAACGGTGACAGCATGCACATGCGTATTTTACGTTTAGTCTATAGGCATGGGCGTTTGGCTCGAGTGCGTATGTGCGCAGGCGCGTAGTCTTTCTTTCCAGAGTGACATCGGCAACTACTGGCCTGACATACATAATACAGCGTTTTCACAGATCCGTGTTAACGGGATTGTTTTGACAGCGTTGTCTATACAAAGGAAAAAAAACTCTGTTTTTTTGACATTGTTGTCGTGTCACGTACCCTCAAATTATTAATCATTAATAAA

Function

symbol description
f7 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood plasma; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including acute pancreatitis; artery disease (multiple); diabetes mellitus (multiple); factor VII deficiency; and obesity. Orthologous to human F7 (coagulation factor VII).

NR:

description
F7i protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06291499_06294321.mRNA True 2848 mRNA 0.47 8 6290549 6294875

Neighbor

gene id symbol gene type direction distance location
CI01000299_06281861_06289368 NA coding downstream 524 6279383 ~ 6290025 (-)
CI01000299_06274590_06278765 PROZ coding downstream 11417 6274427 ~ 6279132 (-)
CI01000299_06268189_06268676 NA coding downstream 21154 6268189 ~ 6269395 (-)
CI01000299_06257032_06266210 CUL4A coding downstream 24339 6255857 ~ 6266210 (-)
CI01000299_06242885_06246604 LAMP1 coding downstream 43945 6241996 ~ 6246604 (-)
CI01000299_06295715_06298755 F7 coding upstream 738 6295613 ~ 6298775 (-)
CI01000299_06299968_06305021 NA coding upstream 4021 6298896 ~ 6305158 (-)
CI01000299_06306931_06307410 NA coding upstream 11225 6306100 ~ 6307410 (-)
CI01000299_06310939_06311125 NA coding upstream 16064 6310939 ~ 6311229 (-)
CI01000299_06320613_06321046 NA coding upstream 25689 6320564 ~ 6321046 (-)
G407939 NA non-coding downstream 58274 6226412 ~ 6232275 (-)
G407923 NA non-coding downstream 68170 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 107014 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 144625 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 176059 6108478 ~ 6114490 (-)
G407986 NA non-coding upstream 94501 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 97169 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 122251 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 144646 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 145372 6440247 ~ 6440470 (-)
G407805 NA other downstream 454560 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 834441 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1361731 4913373 ~ 4927715 (-)
G407413 NA other downstream 1739828 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 237126 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location