XLOC_000124 (si:dkeyp-75b4.10)


Basic Information

Item Value
gene id XLOC_000124
gene name si:dkeyp-75b4.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9994811 ~ 10000376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000224
ACACCAAACACTATTGAGGAGCTGAATCTACCAGGACCTTGTCAAGATGTGGATTTCTGCAGCATTCCTTCTTTTTGCATTGGCTGTAAATGGAGTCAAGTCTGATGTTCCAAACATTAGTCGAAGATGCCCCTCTGGCTGGGAGAAATTTGGATCACAATGCTTTAAGTTTTTCAGCGAATATAAAACATGGGCTGAGGCTGAGAAACATTGTGTTGACCTCGGAGGAAACCTAGCATCCATCCAGAGTGATATCACTCACAATTTTCTTATAGCTTATTTGAAAAGACAAGAAAAAGGCATCACCCGGACCTGGATTGGTGCTCATGATGCAACTCagGCGGACATCTGGTTTTGGAGTGACGGATCAAAGTTTGAATACAGTGCCTGGCATTCAGGAGAACCAAATAATGGAGGAAATGCCGAAAGATGCGCGGAGATGGGCTTTGGAGATGAGCAGCGCTGGAATGACGCACGTTGTGAAACTCGTCTCAATTTCATCTGTTACAGAATGACAAGAATCAATATGTAATAATCATTTTAACTGATAAGGTAAAATCATGACAGTCCATCTCAGACCAAGTCCTCAAAATAGCCGATTGTAACAGATGCTTTGCCATTAAATGGTAAATTCAGTCTTAATGCAATCATCATGCAACAATAAAACTCTTATCAAATCC
>TCONS_00000225
ACCAAACACTATTGAGGAGCTGAATCTACCAGGTTCGAGTTTCTGTTGTATTTCCATTCTTAGTGTTATTTATGCgcatattaatttacaataatgCTGATTTTTACAGGACCTTGTCAAGATGTGGATTTCTGCAGCATTCCTTCTTTTTGCATTGGCTGTAAATGGAGTCAAGTCTGATGTTCCAAACATTAGTCGAAGATGCCCCTCTGGCTGGGAGAAATTTGGATCACAATGCTTTAAGTTTTTCAGCGAATATAAAACATGGGCTGAGGCTGAGAAACATTGTGTTGACCTCGGAGGAAACCTAGCATCCATCCAGAGTGATATCACTCACAATTTTCTTATAGCTTATTTGAAAAGACAAGAAAAAGGCATCACCCGGACCTGGATTGGTGCTCATGATGCAACTCagGCGGACATCTGGTTTTGGAGTGACGGATCAAAGTTTGAATACAGTGCCTGGCATTCAGGAGAACCAAATAATGGAGGAAATGCCGAAAGATGCGCGGAGATGGGCTTTGGAGATGAGCAGCGCTGGAATGACGCACGTTGTGAAACTCGTCTCAATTTCATCTGTTACAGAATGACAAGAATCAATATGTAATAATCATTTTAACTGATAAGGTAAAATCATGACAGTCCATCTCAGACCAAGTCCTCAAAATAGCCGATTGTAACAGATGCTTTGCCATTAAATGGTAAATTCAGTCTTAATGCAATCATCATGCAACAATAAAACTCTTATCAAATCCATATTTTGGCGTGTC

Function

symbol description
si:dkeyp-75b4.10 Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-394 Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000079043

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000224 False 680 mRNA 0.41 6 9994811 10000361
TCONS_00000225 True 770 mRNA 0.40 5 9994813 10000376

Neighbor

gene id symbol gene type direction distance location
XLOC_000123 si:dkeyp-75b4.8 coding upstream 12697 9966384 ~ 9982114 (+)
XLOC_000122 pdia2 coding upstream 28616 9954489 ~ 9966195 (+)
XLOC_000121 NA coding upstream 42938 9946664 ~ 9951873 (+)
XLOC_000120 NA coding upstream 80181 9886955 ~ 9914630 (+)
XLOC_000119 pmm2 coding upstream 127955 9860381 ~ 9866856 (+)
XLOC_000125 trim2b coding downstream 2817 10003193 ~ 10033113 (+)
XLOC_000126 fgb coding downstream 51387 10051763 ~ 10059496 (+)
XLOC_000127 si:ch73-132f6.5 coding downstream 73967 10074343 ~ 10124192 (+)
XLOC_000128 rbm46 coding downstream 126787 10127163 ~ 10137776 (+)
XLOC_000129 npy2rl coding downstream 221192 10221568 ~ 10235337 (+)
XLOC_000116 BX323038.1 non-coding upstream 709460 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 862321 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 1018389 8967479 ~ 8976422 (+)
XLOC_000133 AL935188.1 non-coding downstream 363344 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 461668 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 617148 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 644888 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 644988 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01331788_01335474 NA coding CI01000300 null 1330359 ~ 1335569 (+)