G405618


Basic Information

Item Value
gene id G405618
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3320524 ~ 3321012 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466111
CTTCCTCTAGTGGGACAACAGACAAAAAATGTTTTTATATTTAGTGTGTATGTGCATTTTATGATTTGTAGATTCTGAGGAAAGAAAATACAGTAAAAATTAGGGCTGTCACAATTCCTCGATTAAAGGGGACCTATTATGTCCCTTTTTACAAGATGTACAATAAGTCTCTGGTGTCTCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCATGTTGTAAATGCCCATTTTTGAGTGGAAGGAAAAACATGCTGTTTTCGTGCATGTATCTTTAAATGCAAATGAGCTGCTGCTCCCCGCCCTGCATTCCAGAAGAGGGCGGAGCCTGTACAACTCACGCCTCTAATACTCTGCAAACACTAAAAAAACATCTGTTTTTTTATCATCCGAAGCACGTGCATAGAAAGCTGGCTGTCAGATGGCGCGTCTATTTCATTTCTTATTGTGCTTAAACTGTCAAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466111 True 489 lncRNA 0.39 1 3320524 3321012

Neighbor

gene id symbol gene type direction distance location
CI01000299_03268500_03312490 HECW2 coding upstream 7196 3268193 ~ 3313328 (+)
CI01000299_03267154_03267336 NA coding upstream 53133 3267154 ~ 3267391 (+)
CI01000299_03237334_03244737 GTF3C3 coding upstream 75709 3237334 ~ 3244815 (+)
CI01000299_03215678_03230586 NA coding upstream 89938 3215678 ~ 3230586 (+)
CI01000299_03189537_03200831 FAM134A coding upstream 119118 3189319 ~ 3201406 (+)
CI01000299_03366963_03373293 NA coding downstream 45806 3366818 ~ 3373682 (+)
CI01000299_03382616_03423028 NA coding downstream 61479 3382491 ~ 3423697 (+)
CI01000299_03453437_03453736 NA coding downstream 131288 3452300 ~ 3454209 (+)
CI01000299_03478949_03486009 NA coding downstream 155076 3476088 ~ 3486009 (+)
CI01000299_03495286_03498691 NA coding downstream 173527 3494539 ~ 3498729 (+)
G405611 NA non-coding upstream 111113 3208926 ~ 3209411 (+)
G405407 NA non-coding upstream 509852 2810452 ~ 2810672 (+)
G405390 NA non-coding upstream 590015 2730273 ~ 2730509 (+)
G405385 NA non-coding upstream 599200 2720862 ~ 2721324 (+)
G405329 NA non-coding upstream 605383 2659354 ~ 2715141 (+)
G405619 NA non-coding downstream 183 3321195 ~ 3321433 (+)
G405621 NA non-coding downstream 13215 3334227 ~ 3335205 (+)
G405660 NA non-coding downstream 85573 3406585 ~ 3406810 (+)
G405663 NA non-coding downstream 89522 3410534 ~ 3410764 (+)
G405690 NA non-coding downstream 141366 3462378 ~ 3462582 (+)
G405609 NA other upstream 165350 3154597 ~ 3155174 (+)
G403972 NA other upstream 2714174 604870 ~ 606350 (+)
G403609 NA other upstream 2909736 364139 ~ 410788 (+)
G403578 NA other upstream 3248253 35462 ~ 72271 (+)
CI01000299_04131136_04133439 PCNP other downstream 810246 4131060 ~ 4133941 (+)
G405842 NA other downstream 974521 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1168806 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 1381370 4703071 ~ 4704780 (+)
G406096 NA other downstream 1603450 4924462 ~ 4927844 (+)

Expression


Co-expression Network