Gene
RNA
| Item | Value |
|---|---|
| gene id | G405619 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 3321195 ~ 3321433 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466112 | True | 239 | lncRNA | 0.44 | 1 | 3321195 | 3321433 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_03268500_03312490 | HECW2 | coding | upstream | 7867 | 3268193 ~ 3313328 (+) |
| CI01000299_03267154_03267336 | NA | coding | upstream | 53804 | 3267154 ~ 3267391 (+) |
| CI01000299_03237334_03244737 | GTF3C3 | coding | upstream | 76380 | 3237334 ~ 3244815 (+) |
| CI01000299_03215678_03230586 | NA | coding | upstream | 90609 | 3215678 ~ 3230586 (+) |
| CI01000299_03189537_03200831 | FAM134A | coding | upstream | 119789 | 3189319 ~ 3201406 (+) |
| CI01000299_03366963_03373293 | NA | coding | downstream | 45385 | 3366818 ~ 3373682 (+) |
| CI01000299_03382616_03423028 | NA | coding | downstream | 61058 | 3382491 ~ 3423697 (+) |
| CI01000299_03453437_03453736 | NA | coding | downstream | 130867 | 3452300 ~ 3454209 (+) |
| CI01000299_03478949_03486009 | NA | coding | downstream | 154655 | 3476088 ~ 3486009 (+) |
| CI01000299_03495286_03498691 | NA | coding | downstream | 173106 | 3494539 ~ 3498729 (+) |
| G405618 | NA | non-coding | upstream | 183 | 3320524 ~ 3321012 (+) |
| G405611 | NA | non-coding | upstream | 111784 | 3208926 ~ 3209411 (+) |
| G405407 | NA | non-coding | upstream | 510523 | 2810452 ~ 2810672 (+) |
| G405390 | NA | non-coding | upstream | 590686 | 2730273 ~ 2730509 (+) |
| G405385 | NA | non-coding | upstream | 599871 | 2720862 ~ 2721324 (+) |
| G405621 | NA | non-coding | downstream | 12794 | 3334227 ~ 3335205 (+) |
| G405660 | NA | non-coding | downstream | 85152 | 3406585 ~ 3406810 (+) |
| G405663 | NA | non-coding | downstream | 89101 | 3410534 ~ 3410764 (+) |
| G405690 | NA | non-coding | downstream | 140945 | 3462378 ~ 3462582 (+) |
| G405693 | NA | non-coding | downstream | 146085 | 3467518 ~ 3467780 (+) |
| G405609 | NA | other | upstream | 166021 | 3154597 ~ 3155174 (+) |
| G403972 | NA | other | upstream | 2714845 | 604870 ~ 606350 (+) |
| G403609 | NA | other | upstream | 2910407 | 364139 ~ 410788 (+) |
| G403578 | NA | other | upstream | 3248924 | 35462 ~ 72271 (+) |
| CI01000299_04131136_04133439 | PCNP | other | downstream | 809825 | 4131060 ~ 4133941 (+) |
| G405842 | NA | other | downstream | 974100 | 4295533 ~ 4320141 (+) |
| CI01000299_04480751_04492829 | NA | other | downstream | 1168385 | 4480553 ~ 4493116 (+) |
| CI01000299_04703290_04704365 | NA | other | downstream | 1380949 | 4703071 ~ 4704780 (+) |
| G406096 | NA | other | downstream | 1603029 | 4924462 ~ 4927844 (+) |
