Gene
RNA
| Item | Value |
|---|---|
| gene id | G405966 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4671215 ~ 4671482 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466489 | True | 268 | lncRNA | 0.37 | 1 | 4671215 | 4671482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_04554181_04557794 | NA | coding | upstream | 113375 | 4554111 ~ 4557840 (+) |
| CI01000299_04532498_04539703 | NA | coding | upstream | 131296 | 4532098 ~ 4539919 (+) |
| CI01000299_04513358_04524537 | NA | coding | upstream | 144538 | 4513358 ~ 4526677 (+) |
| CI01000299_04496757_04504238 | NA | coding | upstream | 166732 | 4496386 ~ 4504483 (+) |
| CI01000299_04480751_04492829 | NA | coding | upstream | 178099 | 4480553 ~ 4493116 (+) |
| CI01000299_04703290_04704365 | NA | coding | downstream | 31589 | 4703071 ~ 4704780 (+) |
| CI01000299_04736806_04740333 | CLIC6 | coding | downstream | 65324 | 4736806 ~ 4740975 (+) |
| CI01000299_04819297_04829755 | NA | coding | downstream | 147203 | 4818685 ~ 4829987 (+) |
| CI01000299_04864582_04885052 | RUNX1 | coding | downstream | 192710 | 4864192 ~ 4885385 (+) |
| CI01000299_04892566_04900169 | NA | coding | downstream | 218909 | 4890391 ~ 4900536 (+) |
| G405865 | NA | non-coding | upstream | 6171 | 4649936 ~ 4665044 (+) |
| G405881 | NA | non-coding | upstream | 7820 | 4658341 ~ 4663395 (+) |
| G405938 | NA | non-coding | upstream | 120416 | 4475988 ~ 4550799 (+) |
| G405932 | NA | non-coding | upstream | 215530 | 4455446 ~ 4455685 (+) |
| G405967 | NA | non-coding | downstream | 43 | 4671525 ~ 4671895 (+) |
| G406023 | NA | non-coding | downstream | 19413 | 4690895 ~ 4766223 (+) |
| G405994 | NA | non-coding | downstream | 147006 | 4818488 ~ 4933935 (+) |
| CI01000299_04906697_04907091 | NA | non-coding | downstream | 238435 | 4906697 ~ 4910073 (+) |
| G405842 | NA | other | upstream | 351074 | 4295533 ~ 4320141 (+) |
| CI01000299_04131136_04133439 | PCNP | other | upstream | 537274 | 4131060 ~ 4133941 (+) |
| G405609 | NA | other | upstream | 1516041 | 3154597 ~ 3155174 (+) |
| G403972 | NA | other | upstream | 4064865 | 604870 ~ 606350 (+) |
| G406096 | NA | other | downstream | 252980 | 4924462 ~ 4927844 (+) |
| G406244 | NA | other | downstream | 699699 | 5371181 ~ 5373579 (+) |
| G406161 | NA | other | downstream | 1566356 | 6237838 ~ 6300508 (+) |
