Gene
RNA
| Item | Value |
|---|---|
| gene id | G406203 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5312168 ~ 5745426 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466774 | True | 572 | lncRNA | 0.50 | 2 | 5312168 | 5745426 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05128395_05192154 | NA | coding | upstream | 119174 | 5128348 ~ 5192994 (+) |
| CI01000299_04906697_04907091 | NA | coding | upstream | 402095 | 4906697 ~ 4910073 (+) |
| CI01000299_04892566_04900169 | NA | coding | upstream | 411632 | 4890391 ~ 4900536 (+) |
| CI01000299_04864582_04885052 | RUNX1 | coding | upstream | 426783 | 4864192 ~ 4885385 (+) |
| CI01000299_04819297_04829755 | NA | coding | upstream | 482181 | 4818685 ~ 4829987 (+) |
| CI01000299_05778912_05790662 | NA | coding | downstream | 33137 | 5778563 ~ 5790755 (+) |
| CI01000299_05799020_05801977 | NA | coding | downstream | 53516 | 5798942 ~ 5802114 (+) |
| CI01000299_05816534_05817445 | NA | coding | downstream | 71108 | 5816534 ~ 5817456 (+) |
| CI01000299_05836707_05843149 | NA | coding | downstream | 90875 | 5836301 ~ 5843594 (+) |
| CI01000299_05844429_05845510 | NA | coding | downstream | 98735 | 5844161 ~ 5845665 (+) |
| G406134 | NA | non-coding | upstream | 54956 | 5256739 ~ 5257212 (+) |
| G406101 | NA | non-coding | upstream | 355812 | 4956150 ~ 4956356 (+) |
| G405999 | NA | non-coding | upstream | 375720 | 4934315 ~ 4936448 (+) |
| G405994 | NA | non-coding | upstream | 378233 | 4818488 ~ 4933935 (+) |
| G406189 | NA | non-coding | downstream | 11351 | 5756777 ~ 5827969 (+) |
| G406164 | NA | non-coding | downstream | 13798 | 5759224 ~ 5762316 (+) |
| G406210 | NA | non-coding | downstream | 84658 | 5830084 ~ 5831741 (+) |
| G406417 | NA | non-coding | downstream | 154231 | 5899657 ~ 5899988 (+) |
| G406168 | NA | non-coding | downstream | 182756 | 5928182 ~ 5929929 (+) |
| G406096 | NA | other | upstream | 384324 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 607543 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 806251 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 992027 | 4295533 ~ 4320141 (+) |
| CI01000299_04131136_04133439 | PCNP | other | upstream | 1178227 | 4131060 ~ 4133941 (+) |
| G406161 | NA | other | downstream | 492412 | 6237838 ~ 6300508 (+) |
