G406244


Basic Information

Item Value
gene id G406244
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5371181 ~ 5373579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466818
TATCATTTCCATCTTATGTTTCTTGTCCCTTGACAGACCCAAAGGAAAAGGACAGTGATTCCCAAACCACAGAGAAATGTTCCCGAATGACTGTTGATGAATATCAAGCCACAACCTTGACAGAGACTCAGAAGAAGCTGAAATAAATGGAGGAAAATGAAAAATTGAGAAATGACAACAAAAAAGAGCAACGTTGCAAAAAGTGTCCTCATGTGGTGCCCTCCAGCATTGGTGCAGCCATCAATGCCAAACTTACTGAAATTACAGGGAAGAAGAAAACAAAAACATCCGAAAACCTTAATGCTCTTTGATGATTGATAGCCATGACAGTGTGTTCAAGTCATTGACCGCGGCTCCAGCCCTTGAACCCGTCCCCCATCCGAGATGGCTGCCATTCCAGTGTCTCGTCCTGAGATGGCCGTCGTTCCAGAATCTCTTACCGTCATGGCCGCCGTTCCAGAATCTCTTACCGTCACGGCCGCCATTCCCATGTCTCTTTCCGTCATGGTCACTGGTCCAGAGTCTCGTCCTGTCATGGCCGCCATCCCCGAGTCTCATCCCGTCATGGCCGCCGTTCCAGAGTCTTGTCCCGTCATGGCTGCCGAATCTGAGCCCTCAGCCAAAATGCCCACCACATCTGGGCCCTCAGCCAAAACGGCCGCCACCACGCCTATAACTCTAACTTCCTTCCTCGTCCGGGATCCAGAAATGACCTCCTTCCTCGTCCAGAGATGACTCCCTTCCTCATCGAGAGCCCAGAGATGGCTCCAGCCCGAGTCTGCTCCAGTGTCAGCTCCAGCCCCTGAGCCTGCTCCAGTGTTGGCTCCAGCCCCTGAGCCCACTCCAGTGTCACTCCAGCCCCTGAGCCCGCTCCGGTGTCGGCTCCAGCCCCTAATAGGCCTATAAACTCTAAAAATGTTGGGTTAAAAACAACCCAAGTTAGGTTAAATACATTAAAGGTCTGTGTAGCATGACTCAAATGAGAAGTGCTCTTTCTTTCCGCATCTGGCGCGCTCTGTAGTACGACGTATAACAAGTTATAATCGCACTTGTATGAAAAAAGTACAAATATAAAGTTCAAATTTAGCTGTGATTATGAAAGATTATCACGAAGACCATAAAACATCTGAATGTCATTTGCTGACACCTAGGCTTAGGCTACCTAGTTTATTGGAATACATTTCACAAGACAATATTATTACCAGAATAAGGTACATCTCTAAACAGTTTCGCTAGTATAATGTTATAATTATTTTATTGCTAGCGCGCTAACTGGGATAGCTAGGATTCATTTCCAATTGATTTCACTTTCCGGAGAATGTTAAAACTGACTAAAGAGAATTTCTTACTCGAAACTTCATTTTGAAAATATAAAATTCAGTTTTAGAATATATGTAATGTTTCAGTATACATTATCTAATGTTATAAAAGTTATATACATGAAAAACGATAGGACTTACCTTTTATAATAAGACTGCAGCAGCTTCTTTCTGTTGACAGTCACTGGACTATTAAAATTTGAACCGTCGTTGCGGGAACTGTATTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACGCAAATTACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466818 True 1651 TUCP 0.44 3 5371181 5373579

Neighbor

gene id symbol gene type direction distance location
CI01000299_05331367_05364944 NA coding upstream 6204 5331201 ~ 5364977 (+)
CI01000299_05254419_05314859 NA coding upstream 54938 5254419 ~ 5316243 (+)
CI01000299_05128395_05192154 NA coding upstream 178187 5128348 ~ 5192994 (+)
CI01000299_04906697_04907091 NA coding upstream 461108 4906697 ~ 4910073 (+)
CI01000299_04892566_04900169 NA coding upstream 470645 4890391 ~ 4900536 (+)
CI01000299_05392812_05418070 GART coding downstream 19113 5392692 ~ 5418352 (+)
CI01000299_05619817_05725510 NA coding downstream 246125 5619704 ~ 5727439 (+)
CI01000299_05732790_05737401 N6AMT1 coding downstream 359211 5732790 ~ 5737802 (+)
CI01000299_05778912_05790662 NA coding downstream 404984 5778563 ~ 5790755 (+)
CI01000299_05799020_05801977 NA coding downstream 425363 5798942 ~ 5802114 (+)
G406134 NA non-coding upstream 113969 5256739 ~ 5257212 (+)
G406101 NA non-coding upstream 414825 4956150 ~ 4956356 (+)
G405999 NA non-coding upstream 434733 4934315 ~ 4936448 (+)
G405994 NA non-coding upstream 437246 4818488 ~ 4933935 (+)
G405992 NA non-coding downstream 2688 5376267 ~ 5379015 (+)
G405987 NA non-coding downstream 51010 5424589 ~ 5429645 (+)
G406315 NA non-coding downstream 179063 5552642 ~ 5554868 (+)
G406354 NA non-coding downstream 261169 5634748 ~ 5639866 (+)
G406189 NA non-coding downstream 383198 5756777 ~ 5827969 (+)
G406096 NA other upstream 443337 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 666556 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 865264 4480553 ~ 4493116 (+)
G405842 NA other upstream 1051040 4295533 ~ 4320141 (+)
CI01000299_04131136_04133439 PCNP other upstream 1237240 4131060 ~ 4133941 (+)
G406161 NA other downstream 864259 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014055 NA coding PESF01000031.1 PESF01000031.1 159996 ~ 180569 (+)