G406189


Basic Information

Item Value
gene id G406189
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5756777 ~ 5827969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466760
GTGGGATTCAGTAGAAGGATCTTAGTAAACATCTAAAATTGAAATACTTAAATGCTTTATAAATGTGTTTTTTGGTTGTGGGCCAGCAGTTTGCACCAGTTCTGTAGAATCGCCCGTATACGAGTGAACTATATAAATTTGAAGTTGATGATGCATAAAATACATGACAAAATTTTCAGTTGATATTTGGATAGTTTGGGATGAACGGTCACAAGGTAGATTTGTCAAACAAAGACTGTTTATAAGGAGGTTTGCATAATGGCGATAATGATCGACTCTAATAAGGCATGAAATTAGATGATTACTGCAGTCAGTCACAAACAAACAACAGAGCTCAGGACTTTATGGACACATCCTGAATATTCAAGAGACAAAACTGCATACTATATAAATATCTTTTATTTTGGTTGATTCCTATTAAAAAATGCAAAAAAAAAGAAACCCACTGAGAACACAGGAGAAAGCTGTTTGTTTTCCAGTGTGTTTTCTTTGGGAAGCGCAGCTGACGAACCTGAATCACTGACAGTAACACTGAATCTCTTCTGTATGGTGTATGTGTTGGTGATGATCTTTAGCTGATAAAGTCCCGAGTGCTCAGTGTTGGCATTTTTTATTTTGAGGTCTCCACTCTTGGTCTCTAGATCAAGTCTGTTATTGAATCTTACATCACTGTCGTTATATAATATAATTTTTCTCTTTCTATCAGTTTTTGCTATGGAAATGTTTTGAGGTCCAAATGTCCACTCTATCGGATCATCTTTTTCTATTTCAGTCACGCGAGTGTGTAGAAGTACATCATTTCCCTTCTTCTCTGACACCGTCTTCACTCCATCTTTCTCATTACTAAACACACCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466760 True 858 lncRNA 0.36 3 5756777 5827969

Neighbor

gene id symbol gene type direction distance location
CI01000299_05732790_05737401 N6AMT1 coding upstream 18975 5732790 ~ 5737802 (+)
CI01000299_05619817_05725510 NA coding upstream 29338 5619704 ~ 5727439 (+)
CI01000299_05392812_05418070 GART coding upstream 338425 5392692 ~ 5418352 (+)
CI01000299_05331367_05364944 NA coding upstream 391800 5331201 ~ 5364977 (+)
CI01000299_05254419_05314859 NA coding upstream 440534 5254419 ~ 5316243 (+)
CI01000299_05836707_05843149 NA coding downstream 8332 5836301 ~ 5843594 (+)
CI01000299_05844429_05845510 NA coding downstream 16192 5844161 ~ 5845665 (+)
CI01000299_05864998_05873333 NA coding downstream 35665 5863634 ~ 5873515 (+)
CI01000299_05903841_05913302 NA coding downstream 73495 5901464 ~ 5915312 (+)
CI01000299_05925030_05926229 NA coding downstream 96701 5924670 ~ 5926297 (+)
G406203 NA non-coding upstream 11351 5312168 ~ 5745426 (+)
G406354 NA non-coding upstream 116911 5634748 ~ 5639866 (+)
G406315 NA non-coding upstream 201909 5552642 ~ 5554868 (+)
G405987 NA non-coding upstream 327132 5424589 ~ 5429645 (+)
G405992 NA non-coding upstream 377762 5376267 ~ 5379015 (+)
G406210 NA non-coding downstream 2115 5830084 ~ 5831741 (+)
G406417 NA non-coding downstream 71688 5899657 ~ 5899988 (+)
G406168 NA non-coding downstream 100213 5928182 ~ 5929929 (+)
G406427 NA non-coding downstream 120729 5948698 ~ 5948928 (+)
G406213 NA non-coding downstream 185439 6013408 ~ 6015647 (+)
G406244 NA other upstream 383198 5371181 ~ 5373579 (+)
G406096 NA other upstream 828933 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1052152 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1250860 4480553 ~ 4493116 (+)
G405842 NA other upstream 1436636 4295533 ~ 4320141 (+)
G406161 NA other downstream 409869 6237838 ~ 6300508 (+)

Expression


Co-expression Network