Gene
RNA
| Item | Value |
|---|---|
| gene id | G406164 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5759224 ~ 5762316 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466735 | True | 477 | lncRNA | 0.57 | 6 | 5759224 | 5762316 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05732790_05737401 | N6AMT1 | coding | upstream | 21422 | 5732790 ~ 5737802 (+) |
| CI01000299_05619817_05725510 | NA | coding | upstream | 31785 | 5619704 ~ 5727439 (+) |
| CI01000299_05392812_05418070 | GART | coding | upstream | 340872 | 5392692 ~ 5418352 (+) |
| CI01000299_05331367_05364944 | NA | coding | upstream | 394247 | 5331201 ~ 5364977 (+) |
| CI01000299_05254419_05314859 | NA | coding | upstream | 442981 | 5254419 ~ 5316243 (+) |
| CI01000299_05778912_05790662 | NA | coding | downstream | 16247 | 5778563 ~ 5790755 (+) |
| CI01000299_05799020_05801977 | NA | coding | downstream | 36626 | 5798942 ~ 5802114 (+) |
| CI01000299_05816534_05817445 | NA | coding | downstream | 54218 | 5816534 ~ 5817456 (+) |
| CI01000299_05836707_05843149 | NA | coding | downstream | 73985 | 5836301 ~ 5843594 (+) |
| CI01000299_05844429_05845510 | NA | coding | downstream | 81845 | 5844161 ~ 5845665 (+) |
| G406203 | NA | non-coding | upstream | 13798 | 5312168 ~ 5745426 (+) |
| G406354 | NA | non-coding | upstream | 119358 | 5634748 ~ 5639866 (+) |
| G406315 | NA | non-coding | upstream | 204356 | 5552642 ~ 5554868 (+) |
| G405987 | NA | non-coding | upstream | 329579 | 5424589 ~ 5429645 (+) |
| G405992 | NA | non-coding | upstream | 380209 | 5376267 ~ 5379015 (+) |
| G406210 | NA | non-coding | downstream | 67768 | 5830084 ~ 5831741 (+) |
| G406417 | NA | non-coding | downstream | 137341 | 5899657 ~ 5899988 (+) |
| G406168 | NA | non-coding | downstream | 165866 | 5928182 ~ 5929929 (+) |
| G406427 | NA | non-coding | downstream | 186382 | 5948698 ~ 5948928 (+) |
| G406213 | NA | non-coding | downstream | 251092 | 6013408 ~ 6015647 (+) |
| G406244 | NA | other | upstream | 385645 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 831380 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 1054599 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 1253307 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 1439083 | 4295533 ~ 4320141 (+) |
| G406161 | NA | other | downstream | 475522 | 6237838 ~ 6300508 (+) |
