Gene
RNA
| Item | Value |
|---|---|
| gene id | G406168 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 5928182 ~ 5929929 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU466739 | True | 1728 | lncRNA | 0.47 | 2 | 5928182 | 5929929 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_05925030_05926229 | NA | coding | upstream | 1885 | 5924670 ~ 5926297 (+) |
| CI01000299_05903841_05913302 | NA | coding | upstream | 12870 | 5901464 ~ 5915312 (+) |
| CI01000299_05864998_05873333 | NA | coding | upstream | 54667 | 5863634 ~ 5873515 (+) |
| CI01000299_05844429_05845510 | NA | coding | upstream | 82517 | 5844161 ~ 5845665 (+) |
| CI01000299_05836707_05843149 | NA | coding | upstream | 84588 | 5836301 ~ 5843594 (+) |
| CI01000299_05935373_05943285 | ERCC5 | coding | downstream | 4974 | 5934903 ~ 5943413 (+) |
| CI01000299_05955084_05970603 | NA | coding | downstream | 24287 | 5954216 ~ 5971417 (+) |
| CI01000299_05988564_06002758 | NA | coding | downstream | 58166 | 5988095 ~ 6003021 (+) |
| CI01000299_06018839_06023448 | NA | coding | downstream | 88910 | 6018839 ~ 6023510 (+) |
| CI01000299_06029307_06034445 | NA | coding | downstream | 99028 | 6028957 ~ 6034956 (+) |
| G406417 | NA | non-coding | upstream | 28194 | 5899657 ~ 5899988 (+) |
| G406210 | NA | non-coding | upstream | 96441 | 5830084 ~ 5831741 (+) |
| G406189 | NA | non-coding | upstream | 100213 | 5756777 ~ 5827969 (+) |
| G406164 | NA | non-coding | upstream | 165866 | 5759224 ~ 5762316 (+) |
| G406354 | NA | non-coding | upstream | 288316 | 5634748 ~ 5639866 (+) |
| G406427 | NA | non-coding | downstream | 18769 | 5948698 ~ 5948928 (+) |
| G406213 | NA | non-coding | downstream | 83479 | 6013408 ~ 6015647 (+) |
| G406220 | NA | non-coding | downstream | 95122 | 6025051 ~ 6025357 (+) |
| G406458 | NA | non-coding | downstream | 203914 | 6133843 ~ 6134043 (+) |
| G406463 | NA | non-coding | downstream | 205960 | 6135889 ~ 6136121 (+) |
| G406244 | NA | other | upstream | 554603 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 1000338 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 1223557 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 1422265 | 4480553 ~ 4493116 (+) |
| G405842 | NA | other | upstream | 1608041 | 4295533 ~ 4320141 (+) |
| G406161 | NA | other | downstream | 307909 | 6237838 ~ 6300508 (+) |
