G406461


Basic Information

Item Value
gene id G406461
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6149599 ~ 6151122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU467055
CCAATTCTGAAAGTCGACCTTAATGAGTTTCTGACTGGTAACTACGACAGTGAGAGAGATGGATCATCTGGTGAAATGAGACTGTCAAATTACGATGTTAAAAAAAGAACCTATGCACGGACGAATAATTGTTCACAATAACATGCAAATTAGACACTTTCGACCGCTCCGTACCTCCATCTGCTTCTGCGTCTGCTGCAGCTGCAGTGACAGATGTTGATTGTCCCGCAGAAGCTCCGCCTCAGTTTTGGGCAGGGTGCCGTTTTGCGCTTGCAGCAGAGTTACAGTCTCTCTTCTCAGATCCTCCAGCCGCCGCTCAGACTCAGAAGATGCTGATCTGAGCGGGGAGCTCTCAGACTCACATTCGTTCAGCAGAGCAACATAATGTGTGTTCAGATGCTCGGTCGCTTTAGTGCGACGAGCGATTTGTTGCTCGTGCAGATGTACAATAGCGGCCGTCTGAGGAGATCTTAGCAGAGCCTTGAGATCCTCGAGCTCACGAGTCCTGTGCTGACACTCCTCTGACATCATCACTGCGTGTTTGGCTAAACCGCCCTCCAGAACCCTTAGAATGCTCTCCAATTTCTGCAGGTACTGTTGACGTCTTTCCACCAGACGTGACAGTCTCTGATCCCAGACCTGCTGGAAGTCATCCTGAAGAGATCGGAGAGCCCGTGACGGATCCTGAGTCATGAGGACGAGCAGGTCCTGGAGTCGAGACTCCTCAAACGAAGCCATGTCACGCTGCACCTCCGTCTCGAAGTGTGTCTTGCAGCGCTGCGCTAGTCTCCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU467055 True 793 lncRNA 0.51 3 6149599 6151122

Neighbor

gene id symbol gene type direction distance location
CI01000299_06116505_06128180 GAS6 coding upstream 21149 6115638 ~ 6128450 (+)
CI01000299_06100005_06114087 NA coding upstream 35136 6099717 ~ 6114463 (+)
CI01000299_06074050_06097303 RASA3 coding upstream 52066 6074050 ~ 6097533 (+)
CI01000299_06029307_06034445 NA coding upstream 114643 6028957 ~ 6034956 (+)
CI01000299_06018839_06023448 NA coding upstream 126089 6018839 ~ 6023510 (+)
CI01000299_06177821_06180061 NA coding downstream 26699 6177821 ~ 6180191 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding downstream 66494 6217616 ~ 6221071 (+)
CI01000299_06223295_06227054 ADPRHL1 coding downstream 71770 6222892 ~ 6227186 (+)
CI01000299_06233485_06239858 NA coding downstream 81450 6232572 ~ 6239902 (+)
CI01000299_06269853_06274289 PCID2 coding downstream 118480 6269602 ~ 6274393 (+)
G406463 NA non-coding upstream 13478 6135889 ~ 6136121 (+)
G406458 NA non-coding upstream 15556 6133843 ~ 6134043 (+)
G406220 NA non-coding upstream 124242 6025051 ~ 6025357 (+)
G406213 NA non-coding upstream 133952 6013408 ~ 6015647 (+)
G406427 NA non-coding upstream 200671 5948698 ~ 5948928 (+)
G406470 NA non-coding downstream 32072 6183194 ~ 6183531 (+)
G406162 NA non-coding downstream 38657 6189779 ~ 6197674 (+)
G406478 NA non-coding downstream 55712 6206834 ~ 6207044 (+)
G406196 NA non-coding downstream 114632 6265754 ~ 6266230 (+)
G406142 NA non-coding downstream 128297 6279419 ~ 6286426 (+)
G406244 NA other upstream 776020 5371181 ~ 5373579 (+)
G406096 NA other upstream 1221755 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1444974 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1643682 4480553 ~ 4493116 (+)
G405842 NA other upstream 1829458 4295533 ~ 4320141 (+)
G406161 NA other downstream 86716 6237838 ~ 6300508 (+)

Expression


Co-expression Network