G406162


Basic Information

Item Value
gene id G406162
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6189779 ~ 6197674 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU466733
AAACAAAATAAAATATGAAATAGAATTAAATTAAATAATTAAAATAAAAATCTAATATAAAATAGAATAAAATTAAATTAAATCAAATTAAAAATTAAATCAAATATAAAATGATAAAATTAAATTAACACTTTCTTGGCAAGCATTTTTTTTTTTTTTTTTTTTTATAAATCATTCATTCTGTTTAATTTCTATACATGAATAAGAAAAGTATATTTTCTTTAGTATTTGTTACATTGTACAAAAAGGGCTGGACGTTTGAGTTGTTGATTTCATGTTCTCAGAGCTGCGGTCATCAGAGCTCCACGTCCAAAATAAAAAGCTCCAATATCAAAAATAGCTGCCTATGAGAGCAAATCACAACAAAACAGGGTACAAAATTCAGCAAACAGTGATAAAAGTCCCCGTGTCACACCTCACACCGCAGGATTCTTCAACAGTAGCCCTGAAGATACAGCAGCAGCAGCACAAAGACGATCAATCGAGCTTATCTGCTCATAAGCTACTGAAGATAATAGACTGAGCTGAAGAATTATGGGAAGCATTTGAGGGAATCCTTACAGCAGGATCACAATATTGAGTTTCAAACAAGAACTGGGAAACAAAAGGAATCTGCATATGATGGCAGCGACGGCTGCTGCTGCGTTAACGTCACCGGTTCTTCAGAGCTCCAGAACCTAATCTTCATCATCATCATCAAAGTCCTCCTCATCATCATCTTCCTCTTCATCCTCCATGTAGGATGTGGGCGTCTCCTCCCTAGACCCGTTGGAGCTGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU466733 True 780 lncRNA 0.35 3 6189779 6197674

Neighbor

gene id symbol gene type direction distance location
CI01000299_06177821_06180061 NA coding upstream 9588 6177821 ~ 6180191 (+)
CI01000299_06116505_06128180 GAS6 coding upstream 61329 6115638 ~ 6128450 (+)
CI01000299_06100005_06114087 NA coding upstream 75316 6099717 ~ 6114463 (+)
CI01000299_06074050_06097303 RASA3 coding upstream 92246 6074050 ~ 6097533 (+)
CI01000299_06029307_06034445 NA coding upstream 154823 6028957 ~ 6034956 (+)
CI01000299_06217616_06220842 DCNL2, DCUN1D2, DCUN1D2A coding downstream 19942 6217616 ~ 6221071 (+)
CI01000299_06223295_06227054 ADPRHL1 coding downstream 25218 6222892 ~ 6227186 (+)
CI01000299_06233485_06239858 NA coding downstream 34898 6232572 ~ 6239902 (+)
CI01000299_06269853_06274289 PCID2 coding downstream 71928 6269602 ~ 6274393 (+)
CI01000299_06312445_06318421 NA coding downstream 114366 6312040 ~ 6318421 (+)
G406470 NA non-coding upstream 6248 6183194 ~ 6183531 (+)
G406461 NA non-coding upstream 38657 6149599 ~ 6151122 (+)
G406463 NA non-coding upstream 53658 6135889 ~ 6136121 (+)
G406458 NA non-coding upstream 55736 6133843 ~ 6134043 (+)
G406220 NA non-coding upstream 164422 6025051 ~ 6025357 (+)
G406478 NA non-coding downstream 9160 6206834 ~ 6207044 (+)
G406196 NA non-coding downstream 68080 6265754 ~ 6266230 (+)
G406142 NA non-coding downstream 81745 6279419 ~ 6286426 (+)
G406172 NA non-coding downstream 112734 6310408 ~ 6311699 (+)
G406480 NA non-coding downstream 125511 6323185 ~ 6323623 (+)
G406244 NA other upstream 816200 5371181 ~ 5373579 (+)
G406096 NA other upstream 1261935 4924462 ~ 4927844 (+)
CI01000299_04703290_04704365 NA other upstream 1485154 4703071 ~ 4704780 (+)
CI01000299_04480751_04492829 NA other upstream 1683862 4480553 ~ 4493116 (+)
G405842 NA other upstream 1869638 4295533 ~ 4320141 (+)
G406161 NA other downstream 40164 6237838 ~ 6300508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000015 tfdp1b coding NC_007112.7 CM002885.2 227241 ~ 243798 (+)