Gene
RNA
| Item | Value |
|---|---|
| gene id | G406494 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6392080 ~ 6392356 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU467088 | False | 277 | lncRNA | 0.41 | 1 | 6392080 | 6392356 |
| TU467090 | True | 209 | lncRNA | 0.41 | 1 | 6392148 | 6392356 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_06322253_06326504 | CREG1 | coding | upstream | 65518 | 6322253 ~ 6326562 (+) |
| CI01000299_06312445_06318421 | NA | coding | upstream | 73659 | 6312040 ~ 6318421 (+) |
| CI01000299_06269853_06274289 | PCID2 | coding | upstream | 117687 | 6269602 ~ 6274393 (+) |
| CI01000299_06233485_06239858 | NA | coding | upstream | 152178 | 6232572 ~ 6239902 (+) |
| CI01000299_06223295_06227054 | ADPRHL1 | coding | upstream | 164894 | 6222892 ~ 6227186 (+) |
| CI01000299_06396938_06400105 | NA | coding | downstream | 4582 | 6396938 ~ 6401342 (+) |
| CI01000299_06416707_06422267 | NA | coding | downstream | 24351 | 6416707 ~ 6422648 (+) |
| CI01000299_06424909_06425694 | NA | coding | downstream | 32455 | 6424811 ~ 6425733 (+) |
| CI01000299_06430810_06434834 | NA | coding | downstream | 35695 | 6428051 ~ 6435178 (+) |
| CI01000299_06439603_06455258 | ILDR2 | coding | downstream | 47247 | 6439603 ~ 6455462 (+) |
| G406480 | NA | non-coding | upstream | 68457 | 6323185 ~ 6323623 (+) |
| G406172 | NA | non-coding | upstream | 80381 | 6310408 ~ 6311699 (+) |
| G406142 | NA | non-coding | upstream | 105654 | 6279419 ~ 6286426 (+) |
| G406196 | NA | non-coding | upstream | 125850 | 6265754 ~ 6266230 (+) |
| G406478 | NA | non-coding | upstream | 185036 | 6206834 ~ 6207044 (+) |
| CI01000299_06541306_06541820 | NA | non-coding | downstream | 148906 | 6541262 ~ 6541985 (+) |
| G406161 | NA | other | upstream | 91572 | 6237838 ~ 6300508 (+) |
| G406244 | NA | other | upstream | 1018501 | 5371181 ~ 5373579 (+) |
| G406096 | NA | other | upstream | 1464236 | 4924462 ~ 4927844 (+) |
| CI01000299_04703290_04704365 | NA | other | upstream | 1687455 | 4703071 ~ 4704780 (+) |
| CI01000299_04480751_04492829 | NA | other | upstream | 1886163 | 4480553 ~ 4493116 (+) |
