CI01000300_00390712_00395191


Basic Information

Item Value
gene id CI01000300_00390712_00395191
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 390611 ~ 395743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00390712_00395191.mRNA
CTATAAAATCACAATTAAATGTGTGAAACATAATTTAAGAAGTATAATTTCACAATATTTTTACACCCCTGTCCGGTTTGTTTCAAACACTTTTTGCCACCATGATTGGTTCTCCAGACTTGGTGGCTTTCACTAAAGAAACAGATTTCAGTGAAATAGACCCATCAGCTCTTCCAGAGGAACTGTCTGTGCCCATGTATCCCTACACTGGGGACATCACCCCATGGTCCAGGATGTCTGGTGCTAATTTTAAGAAGGACTTTATCCTTTTATCAGAGTTTTCGGAGCAAGTTGGGCCCCAACCTTTGCTTACTGTTCCTTCTGAAACCAAGGCTTGTGGGACATTTGATTTGAACCACTTCTCCCTTCGAATTTTGTCAGTGGACTATCAGACCTCCCTCGCCAGCCCAGCAGGTTGTGGCTCTTTGAAACTGAACTTTGTAGAAGACTCAAAGGTAGTTTTAGGGGATTCTAGAGAAGGAGTATTTGCATATGTGCACCACCTTACGCTCTATGACCTGGAGGCTCGTGGATTTGTGCGACCTTTCTGCCTGGCCTATGTGTCGTCTGATGAGAATAAAATCATACAACAATTCCAGCAGCTTTCCACAGAGTTCTCCAGAGTCTCTGAATGTCTGAAAACGGGGAACAGGAAGAACTTTGCGAATGAACTGGAGATAAAACTAAGAAATCTGGAGTATACAAGAGTCATGTTACTTAGAGAGATAGAGAGAGAGTTAAATAAAGCATCTGTAAAATGCACCAATGAAAGGGAATGGATGATGAATGGTATACCTACATTAGATAGAAATACAGAAGATGTAAAACTCAAAGAGTGTGAAACTGAAATAAAATTTCAGAAAGACGGATGTAGGATTTCAGGGAAGGCAGAAGTAGAGTGTGAAAATGAGAACAGGTCATGTATTACACATGAGAAAGATAAACGGTTTGGGGATCGAAGGAAGGACAAGCAGGGTAATATATCTTTCCCAATGCCATTGGCTAACAAAGAACAGGAGTTGGCCACTGTAGAAAAATCAATTCAGGATTATAAAAGCCTTTTAAAACAGGTCACTTGCTACCCAATCAGGAAGCTAAGAAACTCTGAGTACTCTCCTTATGAACCAGATGACCTCCCTCACTCTCTGGAACTTGACCTGGATGATTTAAAGCACGATCAGCTTGCTGGGCCAATGATAGAAAGCAGTGTTTTTACTTACACAAACACACCCTCGCATTCTTCCCGATTTGACAAGCGTCTGAAAACTCTTGAGGAATTGTGTGACGACTACTTCCACCAACAGGCTCTACAGCAACTGTACTCCATTGAGAGGACATTCAGAGGAGATATTTGCCATCTCTACACACAACAACTCTGCCGTAATCTTCTCCGAAACCTTAAATCTACCAATTTCTTATTTGAGGATCCATGTGACTTGGAAGGTGCTGGATTACAGACTGGAATAGCTGGTCAACATTCAGTCCAACAACCCTCCTTTCTTCCTGCACCCTCAATTCTAAGTGAACCTGTCAGTCTTGAGTCATATGCCTCCTGTGTTGAAATGGTGCCAATCAAACTAGAGTTGGGTGGATCTAGCCAATCTCCAGTTGTACCCAGCTCTGTAAATACCCCTTCCGAGGATAGCCTACCCTTGACATCCGACACCGCCCCAGTAGAAGCTGAAATGGAAAATGAGGGAGCAGTTTCAGCTCTGGATTGTCAAGAAAATGTGGAATATGTTTCAGCTTTGATGAAGACCAGTATTAGTAGTGGAGACAGTATTGAGGTCTTAGGGACGGAGAAGTCCTTCAGATCGCAGGGTTCAAATTTACCAATGGATACAGCAATGCAAAGACCACCACCTTTGTCCACTACAGCTGCATTGGAGTGTCTAAGGCAAGGGAGGGTACCTACCAGACGGACTTGCAGTGAAGACAGCATTGAGGTGCTTAGCACGACAGAATCCATCCTACCAGAAGAACTGCGTGCCTCATACCCTTGCGCAATTGATGAGGAAAGCCCAGAGCAAGAGAATGATGAGAAAGACGTGCAAGACAACAAAAATGCTGAATGTGTTCTGGATGTGGGCAATGTTCCTGGAGATCATGGAGGTGCCCGTTTGGTGGAGCCGCAAGGTTTTTATCCTGCCGTCACCCTGACACCACCTGACTGTCCTATTACTTTGACCCTGGGTGGGTCAAGCTCCCAAGATGCTTGTCATGCAACAGAATCACTTCCTTTCTCATTGTTAGATGAGCCCTGTCGGACAGTACCTGATGATTTGTCAGACTGCTTCAGCTACCAGAGCACCACTGCCTCCACAACCTCTGAATGCCCTTTCTCTGTTTGTCTTCCCGGGGAAAAAAGAGAAGGTGGGACCAGACGGAGGCGTGGCAGAGTAGGGCGGGCAGCATTGCAGTTCTCGCGACAGTTTCCCTTTGCAGTTCACGCAGTGTTTAGCCTTCTAAGTGGCCGAACATTGGTGGTCCTAGGCAGCGAGGAGGCTGCAGTGAGACGACTAGTTACAGCACTTTCTGTGTATGTGCCACATCTGAGTAGATACAGAGACAGCATTCAGCCTTGGACTTCAACGCCGCTGCAGCTTACTGACCTGCTCAACTGGAAACTTATCGGCTTTAATAGGATGTGTGGTTTTACAAATTTGCCTCACTGCCTGGGCCATTATAGCCGATACCTCAGTGTTCTAGATGTGGATCAAAAGACACTGCGCTGCCCAACCTACAGTGGTACTCTAATCAACCTGCTGGTGGATCCAAGGAGCCACTTCAAACGTGGAAACACCTACTTCATGTTTGCTCAAAGTGTGCAAAGCAAGCTTGTCACCAGAGCATTACTTTTAACATTTTTACATGGTCACCATACAGCAAGACCACCTTGGGAAAATACAAGGACAGAAAGTTTTCTTTCTGAATTTCACAAAGACGATAAGAAAATACTCAACTATTTATCTGAGCTCATTAAACTTAACTTCATGGAGATTCCACCCAACATCCTCCGATTCAGCTACACCACATCCTCCGTTTTCAAACTCTGAAACAATCGTTCACAAAAACTAGTCAACGATTTGGGCACTGTACAGTAGTTATACTTGGCTTTGATTGCATTCAAACACATCTAGTTGTTTTTGCCCGGCTATAACAGTATAATCTGTACATTTTCTGCATGCTTTGAAATTTTGTTTACAAAGGCAGTTGAATAGAATATTTACGGTAATATTGTGCAAAGATCCCTAAAAACCGTCATAGGTCACAACCTTAAATGATCTGTAACAAAGCAATATTAAACAGCTTATCAGTGTTGCATTTGAAACTTTGTAATTTATTTAAATTACAAAGATTTGTATATGGTTCTGTTTCTGAATATAATTGTGCTTTACATGCTCCAGGTATTAATCACAGTACTGTAATGTTGAAAAATACTGAAATTGAAATACTATTTCAATTTCCCAAAAAAGAAAAAACACTTGACAATGGAAAAAAATTACCACTACCACTTATAACCTTTGAAAACGTTAAAGGCACTCTTTCTGTACATTAAAACTGTACAGTTTGTTTATCTTGAAGAGTCAAATGTTAATATATACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00390712_00395191.mRNA True 3608 mRNA 0.42 2 390611 395743

Neighbor

gene id symbol gene type direction distance location
CI01000300_00380880_00388140 MIEF2 coding upstream 2046 380880 ~ 388565 (+)
CI01000300_00373895_00378177 ALKBH5 coding upstream 12208 373895 ~ 378403 (+)
CI01000300_00324861_00371897 NA coding upstream 18190 324566 ~ 372421 (+)
CI01000300_00313257_00313598 NA coding upstream 76970 313257 ~ 313641 (+)
CI01000300_00226653_00303160 NA coding upstream 87451 226653 ~ 303160 (+)
CI01000300_00422911_00432735 NA coding downstream 26848 422591 ~ 432772 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding downstream 90151 485894 ~ 492836 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding downstream 112733 508476 ~ 514751 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 287080 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 299524 695267 ~ 729746 (+)
G408197 NA non-coding upstream 17495 372900 ~ 373116 (+)
G408172 NA non-coding upstream 69535 320877 ~ 321076 (+)
G408171 NA non-coding upstream 69768 320609 ~ 320843 (+)
G408166 NA non-coding upstream 95637 294550 ~ 294974 (+)
G408163 NA non-coding upstream 101648 288654 ~ 288963 (+)
G408141 NA non-coding downstream 45709 441452 ~ 478136 (+)
G408216 NA non-coding downstream 54795 450538 ~ 461022 (+)
G408235 NA non-coding downstream 147506 543249 ~ 543488 (+)
G408238 NA non-coding downstream 154737 550480 ~ 550839 (+)
G408239 NA non-coding downstream 155756 551499 ~ 552763 (+)
G408510 NA other downstream 580857 976600 ~ 977099 (+)
G408498 NA other downstream 621324 1017067 ~ 1020734 (+)
G408910 NA other downstream 1237287 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1354157 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1917666 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000096 smcr8b coding NC_007112.7 CM002885.2 8534698 ~ 8540050 (+)