CI01000300_00486146_00492357 (FSCN1B, FSCN1)


Basic Information

Item Value
gene id CI01000300_00486146_00492357
gene name FSCN1B, FSCN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 485894 ~ 492836 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00486146_00492357.mRNA
GAATAAAAACAGCAAGACGCCTAAAAAAATTACATAGGCTACAGCCTACATATCAGCATCTCTCTCAGTCTCTCAGTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCACTCTCTCTCAGTCTCTCTCCCTCACGCGCCATCATATATCACTCGTCACACCCACTCCTCAGAACCGCTGCTCACCGATTCTCACCGAACCGTAACGTCTAAACAGCTCCAGCATGTCTTCGGAAGGATTAGGCGAGACTTTGGTGATTCGGTTGGGGCTAATAAACGCCAATAACAAATATCTGACAGCGGAGACGTTTGGTTTTAAAATCAACGCCTCCGCGAGCTCCATGAAGAAAAAGCAGGTGTGGACACTGGAGCAGTCCGGAGACCACGGAGACTCCAATGCCGTGTTTATCAAAAGCCACCTGGGTCGCTACCTCGCCACCGACAAGGACGGCAACGTGACCGCGGACAGCGAGCAGCCCGGCCCGGACTGTCGGTTCCTTGTGATCGCCCACGACGACGGCCAGTGGTCCCTGCAGTCCGAGCCCCACGCGCGCTACCTGGGCGGGACCGAGGACCGGATCGCGTGCTTTGCGCAAAGCATCTCGCCTGCGGAGAAATGGAACGTGCACCTGGCCGTCCATCCTCAGGTGAACGTGTACAGCATCGCGCGCAAGCGGTACGCGCACCTGTGCGCCGAGAGGAACGAGCTTGCCGTGGACCGCGACGTGCCGTGGGGTGTGGATTCACTGCTCACGCTCGTGTACCTGGACCACCGGTATCATCTACAGACCGCCGACAACCGCTTCCTCACGTGCAGCGGTACCCTGACTGCCAAACCGGGCACGGGCACCGGGTTCACGCTGGAATTCCGCGCGGGGAAGGTGGCTTTCCGGGACGCCACGGGCAAATACATCGCGCCCACGGGTCCCACCGGGACAATGAAGTCAGGCAAGAGCGCGCGTGTCGGCAAAGATGAGCTTTTTGTCCTCGAGCAAAGTCACGGGCAAGTGGTGCTCACTGCCAGCAACGAAAGAAACATCTCCATGCGCCAGGGGGTTGATTTATCAGCCAATCAGGATGAGGAGTCCGATCAGGAGGTGTTTCAGATGGAGATGGACAGGGAGGCAAAGCGCTGTGCCTTCCGATCTTGCAATGGGAAGTACTGGAGTCTGACCCCAAGTGGAGCGATTCAGTGCTCTGCCTCCACTAAATCACCCAGTTGTTTCTTTGACCTTGAGTGGAAAGGGTCAAAAGTGGCACTGAAAGCCAGTAATGGTAAATACCTGGCAGCCAAGAAGAACGGACAGCTGGCGGGCGCTGTGGACTCTGCAGGCGAGCAGGAGGAGTTTGTGCTGAAGCTCATCAACAGGCCGTTGATAGTGCTGCGTGGGGAACACGGCTTTATTGGTTGCCGCAAGCAAGGAACCGGTACACTTGATTCCAACCGCTCATCCTATGATGTCTTCCAGTTAGAGTACAACAACAACGCTTACAGCCTCAGAGACTCGGTGGGGAAGTACTGGACAGTGGAGGCAGACGGCTCTGTGATTAGCAGCAGTGACACACCTGTCTATTTCCACTTTGAGTTCTGTGATTATAATAAAGTGGCCATTAAGACACAGAAGGGCAAGTATCTTAAGGGAGACCACGCTGGGGTGCTCAAGGCCAGCGGCCAGGCGATTCCTGATGCAACATTGTGGGAATACTGAGAAACATTCATGAATCTACACACACAAACATTGTGTGTTCTTTAAACCTATACTTAAACATAACACATACTCTACAGCATAAGCACAAGATTATAACGTACAGTCCATATCACGCAACATATGAAAATATTTCAACATAAGCTAATGGCTCAAGACACAAAAACACATTTGAATGTAAAGTACAAACAAATGCACAAATTAATTACTTGTCATTAATCTCATTCAATTAAAGGGGTATTTCACACAAAAATGAAAATTCTGTCTCACCCTCATGTCGACGCAAACCTGTATGACTTACTTTTCTCTGTCAAACATAAAAGAAGATATTTTGACATTTAGACAGTTTAAAATATCTTCCTTTGTGTTCTCCAGAAGAAAGAAAGTCATACAGGTTTGGAACGACATGAATGGAACAACATCAATTTTTGGGTGAATTTTTCCTTTAACAAAGCACAAATTGATGGTACACTGACAAAGTA

Function

symbol description
fscn1b Predicted to enable actin filament binding activity and protein-macromolecule adaptor activity. Predicted to act upstream of or within actin filament organization and cell migration. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in brain and telencephalon. Orthologous to human FSCN1 (fascin actin-bundling protein 1).
fscn1 Enables actin filament binding activity and drug binding activity. Involved in several processes, including microspike assembly; positive regulation of cellular component organization; and regulation of plasma membrane bounded cell projection assembly. Located in several cellular components, including actin cytoskeleton; microspike; and ruffle. Biomarker of cholangiocarcinoma; common bile duct neoplasm; pancreatic cancer; and pancreatic ductal carcinoma.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00486146_00492357.mRNA True 2216 mRNA 0.50 5 485894 492836

Neighbor

gene id symbol gene type direction distance location
CI01000300_00422911_00432735 NA coding upstream 53122 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 90151 390611 ~ 395743 (+)
CI01000300_00380880_00388140 MIEF2 coding upstream 97329 380880 ~ 388565 (+)
CI01000300_00373895_00378177 ALKBH5 coding upstream 107491 373895 ~ 378403 (+)
CI01000300_00324861_00371897 NA coding upstream 113473 324566 ~ 372421 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding downstream 15640 508476 ~ 514751 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 189987 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 202431 695267 ~ 729746 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 239172 732008 ~ 734966 (+)
CI01000300_00740073_00744573 NA coding downstream 246260 739096 ~ 746407 (+)
G408141 NA non-coding upstream 7758 441452 ~ 478136 (+)
G408216 NA non-coding upstream 24872 450538 ~ 461022 (+)
G408197 NA non-coding upstream 112778 372900 ~ 373116 (+)
G408172 NA non-coding upstream 164818 320877 ~ 321076 (+)
G408171 NA non-coding upstream 165051 320609 ~ 320843 (+)
G408235 NA non-coding downstream 50413 543249 ~ 543488 (+)
G408238 NA non-coding downstream 57644 550480 ~ 550839 (+)
G408239 NA non-coding downstream 58663 551499 ~ 552763 (+)
G408413 NA non-coding downstream 173191 666027 ~ 666266 (+)
G408414 NA non-coding downstream 173670 666506 ~ 666733 (+)
G408510 NA other downstream 483764 976600 ~ 977099 (+)
G408498 NA other downstream 524231 1017067 ~ 1020734 (+)
G408910 NA other downstream 1140194 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1257064 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1820573 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000103 fscn1b coding NC_007112.7 CM002885.2 8662530 ~ 8670486 (+)