CI01000300_00695491_00729459 (PRKCB, PRKCBA, PRKCBB)


Basic Information

Item Value
gene id CI01000300_00695491_00729459
gene name PRKCB, PRKCBA, PRKCBB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 695267 ~ 729746 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00695491_00729459.mRNA
ATTTAAAACGACTGTGCGAAGGGGGCGTGGTTACAGTATCACTGAAGCACCGCTGCCCGCGCGCTCCACCACAACAGTCAGCTGGGGAGAGGCAGGCGTGAGTGTGTGCGCGCGCGCGTGCCGACCAACCGGGAAGCGAAGCGCAAGCAGAGCAAGACCCCGTACAACGGCGCAGGCTACAACTCGAGAAGATTTCTACCCACTACATCCATTCCGTCCCCATCATGGCCGACCCAACGGCTGCCGACGGAGAGGGGGGCGCGCGAGGCTTCGCCAGGCAAGGCGCTCTGAGGCAGAAGAACGTGCACGAAGTGAAGAACCACAAGTTCATCGCGCGCTTCTTCAAGCAACCGACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGTTTCGGCAAACAAGGCTTCCAGTGTCAAGTGTGCTGTTTCGTGGTCCACAAACGCTGCCATGAATTTGTTACTTTCACCTGCCCAGGGGCCGACAGGGGCCCTGCATCAGATGACCCTCGCAGTAAGCATAAATTCAAGGTACACACATACTCCAGCCCCACGTTCTGTGACCACTGTGGATCTCTACTATACGGGCTCATACACCAAGGGATGAAATGTGATACTTGTATGATGAATATTCATAAACGATGTGTGGAAATGGTTCCCAGCCTGTGCGGAACAGACCACACCGAAAGGAGAGGACGGCTGCATATCACTGCTAATATCACAAATAATGTTCTCTCCGTGACCATCAAGGAGGCTCGTAACTTGGTGCCAATGGATCCAAATGGACTGTCAGATCCATACGTGAAGCTTAAATTAATTCCAGACCCAAAGAGTGAGAGCAAGCAGAAGACCAAAACCATCAAGTGCTCCCTCAATCCTACCTGGGAGGAACACTTCAGCTTTAACCTCAAAGATACAGATAAAGACAGGCGTTTGTCAGTGGAGGTGTGGGATTGGGATCTGACCAGCAGAAATGACTTCATGGGGTCCATGTCTTTTGGCATCTCGGAGCTGCAGAAACAAGCTGTCAATGGATGGTTTAAGTTGCTGGGTCAAGAGGAAGGGGAATATTTCAATGTTCCAGTTCCACCAGATGGAGAGGAGGGCAATGAAGAACTGAGGCAGAAATTTGAGAGAGCCAAGATTGGCCCTGGTACTAAGAATATAGATGGCTCTTCAAAGAATGACATCTCCAAATATGATGCCAATGGCAACAAAGACCGCATGAAGCTCACAGACTTCAACTTCATCATGGTGCTGGGCAAAGGCAGCTTTGGCAAGGTGATGTTGGCCGAGCGTAAAGGCTCAGATGAGCTGTACGCAGTGAAGATCTTGAAGAAGGATGTGGTCATTCAGGATGATGACGTGGAATGCACTATGGTGGAGAAGAGAGTTCTCGCTCTCTCTGGCAAACCGCCCTTCCTCACCCACCTCCACTCGTGCTTTCAGACCATGGACCGCCTTTACTTCGTGATGGAGTATATCAATGGTGGAGATTTGATGTATCAGATACAACAAGTGGGAAAATTTAAGGAACCCCATGCTGTGTTCTATGCTGCAGAGATTGCCATTGGCCTGTTCTTTCTTCATTCTAAGGGAATTATTTACAGAGATCTGAAGCTGGATAATGTGATGTTGGACTCTGAAGGTCACATTAAGATCGCTGATTTTGGCATGTGCAAAGAGAACATGTTTGATGGGGCCACAACCAAAACCTTCTGTGGCACTCCAGACTACATTGCCCCAGAGATCATTGCATATCAACCGTATGGGAAGTCTGTTGACTGGTGGGCTTATGGAGTGCTTCTGTATGAAATGCTGGCGGGACAGCCTCCTTTTGATGGTGAGGATGAAGATGAGCTATTCCAGTCCATCATGGAGCATCATGTATCTTACCCGAAATCCATGTCCAAAGAAGCAGTGGCCATATGCAAGGGGCTGATGACCAAGCACCCAGCGAAGCGTCTGGGTTGTGGACCAGAGGGAGAACGAGATATTAAGGAACACGCTTTCTTCCGCTACATGGACTGGGATAAGCTGCAAGATAAAGAGGTTCAACCCCCCTTCAAACCCAAAGCATGCGGTCGAGACGCAGAGAACTTTGATCGTTTTTTCACCCGCCATCCTCCCGTCCTGACCCCTCCTGACCAAGAAGTGATTCAAAACCTGGACCAAGAAGAATTTCAGGGCTTCTCATACATTAACCCAAATTTTGCATCTGTGAAATCCAAGTAGCCAGTTTTAGCCAAGCACAATACAGGGACCAATGAGATTACAGATCTTGAAATTACATAGTTTGAATGAGCCAATGAGAGAGTTCAACCAGATTGATGGAAGAATGGGGGTTATTTCAATCTATTTTGTTCCGTCTTGCTTATTTCTTGTTTGATTTAAAGGATCAAGGGAAAAGATTGACTAACTTTGTAAATGAACTTATAAAGAGTGAGTGAGTGTGTGGCGGCTTTGCGAGATTTTGACTATTTGATGCTTGTATATCATGGACTGTGGTGTTACGGGTCTCA

Function

symbol description
prkcbb Predicted to enable several functions, including androgen receptor binding activity; histone kinase activity (H3-T6 specific); and nuclear receptor coactivator activity. Acts upstream of or within blood coagulation and embryonic hemopoiesis. Predicted to be located in nucleus. Is expressed in brain; retinal neural layer; and somite border. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and lung non-small cell carcinoma. Orthologous to human PRKCB (protein kinase C beta).
prkcba Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and membrane. Is expressed in several structures, including brain; forebrain neural keel; otic placode; pectoral fin musculature; and pronephros. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and lung non-small cell carcinoma. Orthologous to human PRKCB (protein kinase C beta).
prkcb Enables several functions, including androgen receptor binding activity; nuclear receptor coactivator activity; and protein serine/threonine kinase activity. Involved in histone H3-T6 phosphorylation; regulation of glucose transmembrane transport; and regulation of transcription by RNA polymerase II. Located in cytosol; nucleoplasm; and plasma membrane. Implicated in dilated cardiomyopathy and lung non-small cell carcinoma. Biomarker of Alzheimer's disease.

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process

KEGG:

id description
K19662 PRKCB; classical protein kinase C beta type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00695491_00729459.mRNA True 2518 mRNA 0.48 17 695267 729746

Neighbor

gene id symbol gene type direction distance location
CI01000300_00685357_00687717 TLR2 coding upstream 6833 682823 ~ 688434 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding upstream 180516 508476 ~ 514751 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding upstream 202431 485894 ~ 492836 (+)
CI01000300_00422911_00432735 NA coding upstream 262495 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 299524 390611 ~ 395743 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 2262 732008 ~ 734966 (+)
CI01000300_00740073_00744573 NA coding downstream 9350 739096 ~ 746407 (+)
CI01000300_00776177_00776812 NA coding downstream 46271 776017 ~ 776938 (+)
CI01000300_00781242_00787814 PLK1 coding downstream 50929 780675 ~ 788151 (+)
CI01000300_00807040_00826385 CHTF18 coding downstream 77100 806846 ~ 826435 (+)
G408420 NA non-coding upstream 13633 681413 ~ 681634 (+)
G408418 NA non-coding upstream 24925 670104 ~ 670342 (+)
G408414 NA non-coding upstream 28534 666506 ~ 666733 (+)
G408413 NA non-coding upstream 29001 666027 ~ 666266 (+)
G408239 NA non-coding upstream 142504 551499 ~ 552763 (+)
G408459 NA non-coding downstream 118491 848237 ~ 851139 (+)
G408518 NA non-coding downstream 221575 951321 ~ 951581 (+)
G408520 NA non-coding downstream 248901 978647 ~ 978992 (+)
G408499 NA non-coding downstream 249665 979411 ~ 980408 (+)
G408501 NA non-coding downstream 257448 987194 ~ 987647 (+)
G408510 NA other downstream 246854 976600 ~ 977099 (+)
G408498 NA other downstream 287321 1017067 ~ 1020734 (+)
G408910 NA other downstream 903284 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1020154 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1583663 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018470 NA coding CM030135.1 CM030135.1 11677762 ~ 11678127 (+)