CI01000300_00776177_00776812


Basic Information

Item Value
gene id CI01000300_00776177_00776812
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 776017 ~ 776938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_00776177_00776812.mRNA
TAATATAAGGGCAGCATCCTTGTCTCTTCTCAACACTGAGTACCGGATCTCGACGACATTAGTACACTCAAAGTATTTGATTTATATGTGTTATTGAATGTTTGCTCATCAAAAATATCTTCTGCAAACTATAATTTATAAAATTAACGACTGAAGGAATATGTCTTTGCTGGTGCCGGAGCATCGGACTGTGCGCTTTGTGTTTCTAGGCGCCGCCGGAGTCGGAAAAACTGCCCTGATCACCCGCTTCTTGCAGGATCGCTTCGACTCCAAATACACGCGCACGGTGGAAGAGCTTCACGCGCTCGAGTACGACACGGACGGCGCGAGGGTGCGCATTGAGATCTTGGACACGAGCGGCAGTTATCCCTTCCCAGCGATGCGCGCTCTGTGCATCCGAACCGGGGACGCGTTTGCGCTTGTATACGCCGCAGACGAGCCAGACTCCCTGGATGAAGTGCAGCGACTCCGTGAGGAGATTCTGGAGTTGAAAGGGGAGAAGTTTACGGGCATCACGGTGATAGAGAACAAAGCGGACCTGGGCAGTCGGAGTCGCCAGGCTACTGCTGAGGTGATGCGCACGGTGGAGGAGGACTGGGGCGCGGGCTTCGTGGAGACGTCCGCGCGCACCGGCGAGAATGTCAACGGTGTGTTTCGGGACTTGCTCCAACAGATGAAGTTACCGAGCCGCGTGAGCCCGGCACTGCGCAGACGGACGCAGACAATGACCAGAGAGCTTACAGAGACGCGGAAAAAACCTCCAATGAAGAAGAACAACAGCTGTATCTTGTCTTAATGGACATTTACGTGACGTTATATATTGTTATGCATCATACTGATGCTTGAGTGATCTGGATCAAATAGACTCCACATAAATGTTGGACAGTTGAGGGACACTGAATGTTGATACTTTATCATAATA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_00776177_00776812.mRNA True 922 mRNA 0.51 1 776017 776938

Neighbor

gene id symbol gene type direction distance location
CI01000300_00740073_00744573 NA coding upstream 29610 739096 ~ 746407 (+)
CI01000300_00732352_00734178 PRKCB coding upstream 41051 732008 ~ 734966 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding upstream 46271 695267 ~ 729746 (+)
CI01000300_00685357_00687717 TLR2 coding upstream 87583 682823 ~ 688434 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding upstream 261266 508476 ~ 514751 (+)
CI01000300_00781242_00787814 PLK1 coding downstream 3737 780675 ~ 788151 (+)
CI01000300_00807040_00826385 CHTF18 coding downstream 29908 806846 ~ 826435 (+)
CI01000300_00864011_00867698 UNCX4.1, UNCX coding downstream 85802 862740 ~ 868771 (+)
CI01000300_01115718_01128729 NA coding downstream 337860 1114798 ~ 1128760 (+)
CI01000300_01128973_01131417 ELFN1B coding downstream 351874 1128812 ~ 1131441 (+)
G408437 NA non-coding upstream 72249 698185 ~ 703768 (+)
G408420 NA non-coding upstream 94383 681413 ~ 681634 (+)
G408418 NA non-coding upstream 105675 670104 ~ 670342 (+)
G408414 NA non-coding upstream 109284 666506 ~ 666733 (+)
G408413 NA non-coding upstream 109751 666027 ~ 666266 (+)
G408459 NA non-coding downstream 71299 848237 ~ 851139 (+)
G408518 NA non-coding downstream 174383 951321 ~ 951581 (+)
G408520 NA non-coding downstream 201709 978647 ~ 978992 (+)
G408499 NA non-coding downstream 202473 979411 ~ 980408 (+)
G408501 NA non-coding downstream 210256 987194 ~ 987647 (+)
G408510 NA other downstream 199662 976600 ~ 977099 (+)
G408498 NA other downstream 240129 1017067 ~ 1020734 (+)
G408910 NA other downstream 856092 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 972962 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1536471 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000112 rasd3 coding NC_007112.7 CM002885.2 9144958 ~ 9145896 (+)