CI01000300_01275725_01282289


Basic Information

Item Value
gene id CI01000300_01275725_01282289
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1275365 ~ 1282428 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01275725_01282289.mRNA
GTATAAAAAGTCAAAAGACATAAATGTAAACAAAATCAGTTTTCATACTAGCTCATCTGTTTAAAAATTGGTTAAGATGAAGCAAGCAAAAAAGAAAGCTACAATATATGTTCAGGATACTACTAAGTGATATGAATATCATACGTTATTATATTTGCCTGTAATCTAATGCTAATTTTCCAACGGCACACTGACAAAGCACATGTGAAGTGGCAAGTAAGACCAGTAGATTTGCACCACGCAGGCTTTTCAATGATTCGTCAGCGTCAGTGGACTCTTATCAGCAACACAAGACCAGGCAGCAGCATGTTACAGCTCATTTCAACAATTTCCTCTAGAGGTCCGCTGAACTGATCCACTATGAGGTTTCTACACATTCTGTGTTTCACCTTCTTGCTCTGCGGCCTGTGTGTGAGGGCAGAGGTTGAAACCACTGATGACAACATTGAAGAAAAAGAAAACAACAGTGAAGAAAAAGTTGAGGACACCTCTGAAGAAGACACAGAACCAGAGAAACAAGAAAAGACAGATGAAATAACAGAAGAAAAAGACGTTTTGGTCCTTCATAGTGTCAACTTTGACAGAGCTCTCAGTGAGAACAAGTATCTGCTCGTGGAATTTTATGCTCCATGGTGTGGTCACTGCCGCGATCTGGAGCCCATTTATGCTGAAGTGGCTGGACAACTGAAAAATGAGTCATCTGATGTACGGCTGGCCAAAGTGGACGGAACAGAAGAGAAAGAACTTGCCTCAGAGTTTGGTGTAGAGGGTTTTCCCACACTTAAATTCTTCAAAGATGGCAACAGGCAAAATGCCACAGATTTTTCTGGAAAGCGAACTGTAAAAGGAATCACAATGTGGCTGGAGAGGCACACGGGCCCCAGCGCTACTGTTCTCAATGATGTGAAGAGTGCCGAGGCTCTGCTGGATGCAAATGATGTGGTTGTGGTTGGATTCTTTCAGGATTTGGAAGGAGATAAGGCAAAGACATTCTATGATGTAACTTTAATAGTAGTGGACATTAACTTTGGCATCACAAGCAACCCAGAGCTCTTCAAGAAGTATGATGTAAAGAGTGACTCATTGGTGCTCTTCAAGAAGTTTGATGAAAAGCGGGCAGACATGCCACTCTCCGAGGAAGACAAGCTTGATAAAGGGGATCTGATTTCATTCATCCATTCTAACAGTATGAAACTTGTCATTCCATTTAATGAAGAGAATGCTGAACAAATTTTTAAGTCTAAGGTTCGCAAACATTTGCTCCTATTCATTAATACAACTGTGGAATCCCAGAATGCACTGCTCGAAGATTATAGAGATGTTGCCAGTGAGTTTAAGGAAAAAGTGATTTTCATCACGTTAGATGTTACACATGACAAAGTGGATCATGTGCTGAAGTATTTCAGTATCTCTAAAGATGATGCTCCTATTATTCGCCTGATCAACACTGAGAAAGTGGTGACATACGCAATGGAAGGATCAACCATCAATAAAGACACACTGAGAACATTTTGCCAGGGTGTTCTTGATGGTACTGTGAAGCCTTTTTTGAAGACTCAAGAAATTCCAGAGGACTGGGACAAGAATCCGGTTAAAGTCCTTGTAGGGAAGAACTTTAACGAAGTGGCTTTTGATGAGACTAAGAACGTCTTTGTGGAATTTTATGCTCCATGGTGTGGTCACTGTCAGCAGCTGGCTCCTGTGTGGGATGAGTTGGGAGAGAAGTACAAAGACCATGAGAACATAATCATTGCAAAAATGGATGCAGCAGAAAATGATGTGGAAGATGTCACTATACAGGGATTTCCCACCATTAAATACTTTCCTGCTGGGGCTGAAAAGAAGGTGTCGGATGAATCAATAGAAGAGTCACCAAAATCTACCAATGAAACCAGCAAGGATGAGCTGTAAAAACAAAGCATAAATCAACTTTGTACTGAACCAGATCAGTGTGAGATTTATGCAACATGAGCCAAATGTGTTTTATCAGATTAATGTCATTTTCTCTGCACTGGACCATTTCAACAAACTACATTCCTGACTAAATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01275725_01282289.mRNA True 2050 mRNA 0.41 10 1275365 1282428

Neighbor

gene id symbol gene type direction distance location
CI01000300_01272675_01273342 NA coding upstream 1612 1272675 ~ 1273753 (+)
CI01000300_01241607_01253459 RGS11 coding upstream 21356 1241607 ~ 1254009 (+)
CI01000300_01225430_01228695 PMM2 coding upstream 46378 1225430 ~ 1228987 (+)
CI01000300_01128973_01131417 ELFN1B coding upstream 143924 1128812 ~ 1131441 (+)
CI01000300_01115718_01128729 NA coding upstream 146605 1114798 ~ 1128760 (+)
CI01000300_01303949_01305865 NA coding downstream 19479 1301907 ~ 1306339 (+)
CI01000300_01331788_01335474 NA coding downstream 47931 1330359 ~ 1335569 (+)
CI01000300_01343814_01353541 TRIM2, TRIM2B coding downstream 61386 1343814 ~ 1355389 (+)
CI01000300_01373306_01377544 FGB coding downstream 90792 1373220 ~ 1377648 (+)
CI01000300_01390134_01416227 LRATB coding downstream 107296 1389724 ~ 1416713 (+)
G408588 NA non-coding upstream 20389 1254776 ~ 1254976 (+)
G408587 NA non-coding upstream 22896 1252104 ~ 1252469 (+)
G408586 NA non-coding upstream 25182 1249980 ~ 1250183 (+)
G408585 NA non-coding upstream 31016 1244119 ~ 1244349 (+)
G408505 NA non-coding upstream 40151 1235002 ~ 1235214 (+)
G408607 NA non-coding downstream 9388 1291816 ~ 1292458 (+)
G408609 NA non-coding downstream 42434 1324862 ~ 1325451 (+)
G408614 NA non-coding downstream 53376 1335804 ~ 1336027 (+)
G408620 NA non-coding downstream 98134 1380562 ~ 1380835 (+)
G408628 NA non-coding downstream 160196 1442624 ~ 1442884 (+)
G408498 NA other upstream 254631 1017067 ~ 1020734 (+)
G408510 NA other upstream 298266 976600 ~ 977099 (+)
G408910 NA other downstream 350602 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 467472 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1030981 2312515 ~ 2321088 (+)
G409984 NA other downstream 1989257 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2618760 3901148 ~ 3902892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000122 pdia2 coding NC_007112.7 CM002885.2 9954489 ~ 9966195 (+)