CI01000300_01331788_01335474


Basic Information

Item Value
gene id CI01000300_01331788_01335474
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1330359 ~ 1335569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01331788_01335474.mRNA
ATATAAATGAATTTGTGTAATAATGCATGTTAATATGAACTTAATGTACTATATTATTGTAAATTATAATGTGAACAGATACATACAGACATATAGTTCTCCATTAAAACTTAACTTTGTAAGTCTGCAAATATTTAGGACTTTGGGTGTGTCTCAATCAGCTCCCTAGTTCAGTAGTCAGGGCACTGGTCAGGGAGTCGGCCATTTTAAGGGCTGTCTAAATCGCAGAATCCTTCCAGGGCACTGAAACGTTCGCTCCCTAAAAAGTCCCACAATACATCGTGAAAACCAGGGAGCATCGATGCTCACTATGCTCCCTTGGAGTTCTGAAGTGCGAAACTTAAACCATGTGAGCCAACTCACTACACATAGCGACGCGCAATAAATGTTTTTAAAAAATACAAACCATTATTTTATTATATTTCCGCATAAACATACATTGCTAGATGGGTAATGAACATAATCTAGCTAACATTTATAATTTATTTAAGGTTGAAATGCTGCACGTATATGTAACAAGCAAAGTATTTATCATAATTTAGGCCTAACGTACTTTAAATAACATTACAAGTAATGTTAGCGACACCTAGTGGCTGTTACCCAAAAAGCATCAGAGTTTCGCCTCTTGGGTTCTATGCTCTAATTTATGAATGAATCGATTAATTAAAAAAAAAAGCCCCAGATTATTTCACAGAACACTGCTGTAGCTTTCGTTGGAACTATTATTTCGTTGCAAAATAGAGCTAATACTGACAATACTGTGAAGAACATCATTTAATATTACCCGTTTGTTGAACTGTTGTATAAAATCAATGTCACATTTGCAATCGTGTGGATATTTGGATTTGCATACTTGCTCGTATAATATTATCAACATTAAAACAAGAACTCACAAAAGGTATGTTTTGTATCAAGAGTTTGAATCTTAAATTGATCTCTATGCACTTTCTCTGCCAGGCTGTTTTTGTTCTTCATGCTAGTAAGTGCTAGGGGAGAACTGAATGAATAGCAAAACTCAGCATTTTGTTTGCATATTCTCTCTGTCACCTCGCACACCCCAGTTTGGGAACTGCTTTATATGATGAACAGATTTAATTTGGGCTTTTATTCACATATAAATATTGTTCAGCAAACATAAACAAGCTCATTCGAAATGCTCGAGAACAAACATCATTGACTCTTGACCAATGAGGTTCTCAAACGTGCTGAGTAACATGAGAATGAACCTCATTGGTTCTCGCACGCATCAAACAAACATACTTGAGCTTCAGTTTACCACAACTGACTTGTGAGTAGATGAATGTTTATATGTGAATAAATGCTTAAATTCAGTCTGTTCATCATATAAAGCGATTGAGTCTCTTCCGAAAATTTGGACTAAACCGCTCAATTCATATGGATTAATTTTACGATCTCTTTATGATTCAGTATGGATATTCCTGCATTTACTTCTGCTAATGGCTGCATATTCCCACTCCCCGAATACGACGACATAAATCTTAATGATGAGACTCCCACTACATCACCACCCTTATATTCCACTCCTGCAGCGCCACCTCCCTACAGTGAGACAGATTCTGTTGGTCGAAGATGCCCCTCTGACTGGGATAAATTTGGAACACAATGTTTTAAATTTTTCAGTGACTCCAAATCATGGGCTGAGGCAGAGGAACATTGTGTTGCCCTCGGAGGAAACCTTGCATCTATCCAGAGTAGCCTCACTCACACTTTTCTGAAAAACTATGTGAAAAAACAATCAAAGGGCAACACCCGATCCTGGATTGGTGCTCATGATGCACCTCAGGCATTTATCTGGTTTTGGAGTGACGGATCAAAGTTTGAGTACAATGACTGGCACACTGGTGAGCCAAATAATGGAGGAGATGCTGAAAGATGCGTGGAGATGGGCTATGGAGATGAGATCCGCTGGAATGATGCACGCTGTGAAACCCATCTCCCTTTCATCTGTTACAAAATGGCTAAGATTGACTTTAATCCATAATTGATTGATAAACTAATGTCTCATGTCTGTCCATAAATCGCTGATTGTAACAGACATACTTTGCCCTTTGCATTTTAATATCCATTTCTGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01331788_01335474.mRNA True 2097 mRNA 0.38 5 1330359 1335569

Neighbor

gene id symbol gene type direction distance location
CI01000300_01303949_01305865 NA coding upstream 24020 1301907 ~ 1306339 (+)
CI01000300_01275725_01282289 NA coding upstream 47931 1275365 ~ 1282428 (+)
CI01000300_01272675_01273342 NA coding upstream 56606 1272675 ~ 1273753 (+)
CI01000300_01241607_01253459 RGS11 coding upstream 76350 1241607 ~ 1254009 (+)
CI01000300_01225430_01228695 PMM2 coding upstream 101372 1225430 ~ 1228987 (+)
CI01000300_01343814_01353541 TRIM2, TRIM2B coding downstream 8245 1343814 ~ 1355389 (+)
CI01000300_01373306_01377544 FGB coding downstream 37651 1373220 ~ 1377648 (+)
CI01000300_01390134_01416227 LRATB coding downstream 54155 1389724 ~ 1416713 (+)
CI01000300_01419087_01421103 LRATB coding downstream 83518 1419087 ~ 1421332 (+)
CI01000300_01426499_01431069 RBM46 coding downstream 90484 1426053 ~ 1431264 (+)
G408609 NA non-coding upstream 4908 1324862 ~ 1325451 (+)
G408607 NA non-coding upstream 37901 1291816 ~ 1292458 (+)
G408588 NA non-coding upstream 75383 1254776 ~ 1254976 (+)
G408587 NA non-coding upstream 77890 1252104 ~ 1252469 (+)
G408586 NA non-coding upstream 80176 1249980 ~ 1250183 (+)
G408614 NA non-coding downstream 235 1335804 ~ 1336027 (+)
G408620 NA non-coding downstream 44993 1380562 ~ 1380835 (+)
G408628 NA non-coding downstream 107055 1442624 ~ 1442884 (+)
G408634 NA non-coding downstream 126586 1462155 ~ 1462416 (+)
G408851 NA non-coding downstream 151265 1486834 ~ 1487716 (+)
G408498 NA other upstream 309625 1017067 ~ 1020734 (+)
G408510 NA other upstream 353260 976600 ~ 977099 (+)
G408910 NA other downstream 297461 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 414331 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 977840 2312515 ~ 2321088 (+)
G409984 NA other downstream 1936116 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2565619 3901148 ~ 3902892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000124 si:dkeyp-75b4.10 coding NC_007112.7 CM002885.2 9994811 ~ 10000376 (+)
striped catfish (Pangasianodon hypophthalmus) G393178 NA non-coding NC_047622.1 CM018568.1 6746734 ~ 6751462 (-)