CI01000300_01343814_01353541 (TRIM2, TRIM2B)


Basic Information

Item Value
gene id CI01000300_01343814_01353541
gene name TRIM2, TRIM2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1343814 ~ 1355389 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01343814_01353541.mRNA
GTTTGTGCTTTCTGCATCCTTGTATTGTGGGTGCAGTTACACCTTCCAACCGCATGGAGGCGCAGCAGGCTTCTCCTGATAGCAGCAGTGAGGAATGTACTGTACTAGAGGCTCTGCCTGGCAAGGGAACAGCACTAATTTGCTCTCAACACAAAGGAAAAGTGTCTGCACTGTACTGTTTGGCATGTGAGAATGCAGTATGTGAGGACTGTATGAATGAAGAACATGTTGAACACCCCACTGATTCACTGGAAAATATTGTGGACCAACAACTAGCGGCACTGCAGGACAGAGTGGATTCAGCTAAGAACAGGCTTCCTCAGATAAGAGAAGCAGTTCAGAGTTTGAGAGACATTCTGCAGCAGTTGAACACTCAGCGGAGCTCCATAGAGGAAGACATCCACTCCTCCTTCAGCGAGCTGCACAAAACTCTCGATACGCGCAAGAGCGTCCTGCTCATGGAGCTGGAAGTCACTTATGGACTAAAGCAGAAGGTTTTGCAGGCTCAGTTGGACACTCTTCTGAAGGAGGAAGCTGCCATCAACTATAATTGCAGCCTGACCGGCGAGGCCCTGGACGGGGGAAACAAGGCTGTGGTTTTGCAGACCCATAAAGACGTAGGAGAGAGACTGAGTGACCTGGCCAGCCAGGGCCTTCCTCTTCAGCCTGAGGAGAACGACCAGCTGGATCTCATGATGGAGATCGAAGGGCTTCGCAAGTCCATCCACAACTTGGGCACTATCGTCACCACCAATGCCGTGGCCAGTCAGACCGAGGCGTCTGGGGAAGGTCTGGAACAGTGTGTTGTGGGCCAGCCGGCATCTGTCATCATAACCACAAGGGACAAGGCTGGAGGACTGTGCAAGACGGGTAACGCCATCATCTCAGCAGAAGTCTGCACGCCGGATGGAAGTGTTGCAGATGGCGAAATTGTGGACCATAAAAATGGAACATATGAATTCCAATATACGGTGAAGAAAGAGGGCAATTTTAGTCTAGCACTGAGACTTTATGATCAGCATATTAAAGGAAGCCCCTTCCAGTTAAAGGTCGCATGCTCTCCGGATGATTCTCCAACCACCACCACTGCAGCCAATGCTGCATCCACGGGGTCCAGCGATGGTGGGGCGCGGAAACGGAGCGCCAAGTCCCCAGGGAGCAGAAGCCGGCAGAAGGGTGTCAGACGGGGAGGAAGCTTGTTCAGCACCCCAAAAAAGAAAGTGAACCCGATCGAGGACGACCTCATTTTTAGAATAGCTCAAGTCTTTTACATAACATCTGTTGGTTTCTTAGGAACAAAAGGGAGGAATAAAGGAGAGTTCACTAACCTCCAAGGAGTAGCAGCTTGTTCAACAGGAAAAATCTTAATTGCTGACAGTAACAATCAGTGTGTGCAGATATTTTCAAATACGGGAGAGTTTCAAAGCCGGTTCGGGGTACGTGGCCGGTCACCGGGGCAACTGCAGCGGCCCACTGGAGTAGCTGTGCATCCAAATGGGGACATCATTATCGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCTAGTGAGGGCAAATACAAGGCCAAGCTGGGCTCAGGAAGGCTGATGGGACCAAAGGGAGTGTCTGTGGACCAGAATGGTCATGTTATCGTTGTGGACAACAAGGCTTGTACGGTTTTCATCTTCCAGCCCAGCGGGAAACTCGTCACTAAGTTTGGCAGTCGGGGAAACGGCGACAGACAGTTTGCAGGCCCACACTTTGCAGCAGTCAACAACAACAATGAAATAATCATCACAGACTTTCATAACCACTCTGTTAAGGTGTTTAATGCAGATGGTGAATTCTTGCTCAAATTTGGCTCAAACGGTGAAGGCAACGGCCAGTTCAATGCTCCCACAGGCGTTGCTGTGGATGTCAATGGGAACATTATTGTGGCAGACTGGGGAAACAGTCGGATACAGGTGTTTGACGGAAGTGGATCGTTCCTGTCCTACATCAACACCGCTGCCGACCCTCTCTACGGGCCGCAGGGTCTCGCTTTGACCTCGGATGGCCATGTTGTGGTGGCTGATTCTGGGAACCACTGCTTCAAAGTGTACCGCTACCTGCAATGACTTCAGAGGGACTGGAAAAAGAATCAAAGTCAAACTGTATGTGTCCAAATCTTGCACTTAATGTGATGAAATGGTATTCTCCCTCCTTGGTTTTCACATCTTTTAGTGTTTGTTATTATTGTCGGATTACCCTCACAGAAGACTAAAGCTTGTTAACACTATTTATGGGATGCCTTGAAATGCCTTTGCCAAACCTCCACACACTACACTGTGGAAATACTGAGACATCAGAATGCATTGGTGAGTGTACTACCTAAGCTGAAAACTCTGCTCTTATGTGCTGCATGTGGGAACCATGCATGCGCCGCCACCTTTTGGACACATCCGAGTCCCATCTGACTTCTAGGATGCTATTAGAACACTATCTCAACACTTTTATGAACCTTTTGATGAGGAAACGTTTAAGAGATACTCATAACTCATGCAGCCAAGAGAGCAGACAGCGATATCTCACTGACTTCAAGCTTTAGCATTCCCTCTTTGACCATTTGGCTCCATTGTTAATGCATCTTACAGTTGACTAATACACTACCAGTCAAAAGTTTGGAATAATTACAAAGTCTCTTATGCTCACAAAGGCTGCATTTATTTGCTCAAAAATACTGTAAAAATATTTTGGAATATTATTACAATTTAAAATAACTGTTTTGTATTTGAATATGTTGTAAAATGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAACATCATTCCTCCAGTCTTCAGAAATCATTCTAATATGCTGATTTTGAACTTAAGAAACATTTCTTATTATAATCAGTGTTAATTGCGACTTTTTTTCTCAGAATTGTGATATAAAGTCGCAATTGCGAGTTATAAAATCAGAATTGTAAGATATAAACTCACAATTGCATTATAAAGTCCAATTCTGAAAAAAAGTCAGAACTGCTAGTTTATATCTCGCAATTCTGACTTTATAACTCGCAATTGAGTTTATATCTCACAATTATGACTTTATATCTAGCAATTCTGACTTTATAACTTGTAGTTGCAACTTTGTATCACGCAATTCTAAAAAAAAAAATTGCTAGTTTATAACTCACAATTCTGACTTTATAACTGGCGATTCTGAGAAAAAAGTTAGAATTACATTTTTTTTTATTCAGTGGTGGAAACAAGCTTTCATAAAAACATTTTTTTTTTACAGAAATTACCACTTAACACTTAATCAGCAAGGATGCATCAAATGGTTCAAGTGATAGTAAAGACATTTAATGTTGCAAAAATTTATATTTCAAATACATGCTGTTTACTGAATTTTCTATTTGTCAAAGAATCCAGAACAAATAAAGTTTTCAACATTGATAATAATAAAAACCATTATTAGATGATAATTAAGCAGCAAATCAGTATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGGTAATGAAAATTCAGCTTTGCATCACATGAATAAATTACATTTTAAAACAAATTAAAACAGAAAACAGTTCTTTTAAATTGTAATAATATATCATACTTTTTACTGTATATTTGATCAAATATATGCAGCCTTGGTGAGCATAAGACACTTATTAAAAACATAAAAAAAAGAAAAAAGATTATTCCAAACTTTTGACCGGTAGTGTAGGCCCGATTATAGCTTCACAAACGCTGGTCATATTCCATCCGTGTCTGTTTAATTCATTGATCAGTGCAACTGCAATAAGCCAACTTACAGTGTGGAATTGAAACATCACCAATAGCATTTGAAGCATTTGTCCTGTGTAATGACATACTGTGTGGACGTGTGTAAGAGACTAACAGTAGATTACACAACGCACTGTTGCCTTGCATACCTATAGA

Function

symbol description
trim2b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).
trim2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; protein polyubiquitination; and regulation of neuron apoptotic process. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Located in cytoplasm. Implicated in Charcot-Marie-Tooth disease type 2R.

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11997 TRIM2_3; tripartite motif-containing protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01343814_01353541.mRNA True 3947 mRNA 0.42 10 1343814 1355389

Neighbor

gene id symbol gene type direction distance location
CI01000300_01331788_01335474 NA coding upstream 8245 1330359 ~ 1335569 (+)
CI01000300_01303949_01305865 NA coding upstream 37475 1301907 ~ 1306339 (+)
CI01000300_01275725_01282289 NA coding upstream 61386 1275365 ~ 1282428 (+)
CI01000300_01272675_01273342 NA coding upstream 70061 1272675 ~ 1273753 (+)
CI01000300_01241607_01253459 RGS11 coding upstream 89805 1241607 ~ 1254009 (+)
CI01000300_01373306_01377544 FGB coding downstream 17831 1373220 ~ 1377648 (+)
CI01000300_01390134_01416227 LRATB coding downstream 34335 1389724 ~ 1416713 (+)
CI01000300_01419087_01421103 LRATB coding downstream 63698 1419087 ~ 1421332 (+)
CI01000300_01426499_01431069 RBM46 coding downstream 70664 1426053 ~ 1431264 (+)
CI01000300_01480400_01484276 NPY2RL coding downstream 124445 1479834 ~ 1484713 (+)
G408614 NA non-coding upstream 7787 1335804 ~ 1336027 (+)
G408609 NA non-coding upstream 18363 1324862 ~ 1325451 (+)
G408607 NA non-coding upstream 51356 1291816 ~ 1292458 (+)
G408588 NA non-coding upstream 88838 1254776 ~ 1254976 (+)
G408587 NA non-coding upstream 91345 1252104 ~ 1252469 (+)
G408620 NA non-coding downstream 25173 1380562 ~ 1380835 (+)
G408628 NA non-coding downstream 87235 1442624 ~ 1442884 (+)
G408634 NA non-coding downstream 106766 1462155 ~ 1462416 (+)
G408851 NA non-coding downstream 131445 1486834 ~ 1487716 (+)
G408888 NA non-coding downstream 167461 1522850 ~ 1523234 (+)
G408498 NA other upstream 323080 1017067 ~ 1020734 (+)
G408510 NA other upstream 366715 976600 ~ 977099 (+)
G408910 NA other downstream 277641 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 394511 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 958020 2312515 ~ 2321088 (+)
G409984 NA other downstream 1916296 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2545799 3901148 ~ 3902892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location