CI01000300_01963369_01973641 (KNL1, CASC5)


Basic Information

Item Value
gene id CI01000300_01963369_01973641
gene name KNL1, CASC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1963284 ~ 1974476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_01963369_01973641.mRNA
AGTTATTCATAAAGGTACTGCCATGCATTGACAATGCAAAATCACCTCTTAAATTTGTATACTAATCCAACTCACATTTTTAACATGGCATTGTGTACTATGAATATGACAAATTGCTTTCGATGTTCTCTATTTGCAAGTCATATTGGATAAAAGCATCTTCTTTATATATGTAAATGTACATGTTTAATAAGTGAATGGTTTTCTTTTCAGGTAAATTTCATAATGTTATTTGGAAAAAAAAAAAAAAGCTTGTGTAACTAATCCTTGCCACTTTTTCCAGCAACGAGGCAGCGAAATTCTCAAGACGGAGAATTTCTTCGGTACGTATCCATTATGACACTGAAGTGGGTGAAAACGTGACACTTTCTGATGATTTATCCTTTCTGTTTTTGTTTTAAAACATGATCCAAATGGCTATTATCACACACTAGTAAGAATTTAATGCTGATTTTTAGTAATGGGAGAATACACATAAATGATGGGTGATTAAGCTTAAGTGTCCCATTTTACCTGTGTTCACTTTATTGCAGTTTGCGAGACATGACTTAATAATTTTCATAAATTACTAATTGTCTCAAAATGGTAAATAGTGCCTCTTGATTGTCCTCCGACAGATTTTAAAAGCTCCTCGAACATCTATGAATGTACTTGGATCTGAGCAAGAGGAACAAAAGGTGATTACGTTACAAAAATGTTTTAATCTAATTTTTAAAAAAAATTTTTTTTTTTTTAAATGTATTTTTCTATATGTATATATTTATGCAGGAGGAAATTACCAAACCTTTAGAGAAGAAGAGAAATTCGCGAAGAGTGAGTTTTGCCACTACAAATAATGTTCGAGTCTTTACAAAGGGATAAACCAGATGAAAAGATTCTGCGTTTTGTTGATGAGGGAAATCACCAAATCAAAGGCCTGGAAACTTTGTTGAAAACTCCTCTTTATCTATCCCAGCATAAAGAGAATTTCTTTTCTGATCCAGTCTTACAAGATGACTGTGTGGATAGAACAATGCTGCTCGGAGAGGATACTGGATACATGGATATTACTCAAAGCCACACAATCACAATTGATAAGGATTATGAAATTGAAGAAGAACCAAACCCAGATTGTAGCTTCAAAGTGGCTCAGATGATCTGTGGTGATCTGAATGTTGCAAGTCAGAAGGGTTTGCCACGTGAAGCAAAAGCAGAGAGTAAAAATGCTGCAATAGACCCAGACTTCAGTGCTTTTCTTGCCGGTATGTGCTTACCCACTGTAAAAACCATAAAGCCCCCAAATTCAGAAAATGAGCTTGGTAATGTCCTCAGTTCAGCCAATACAAGCACAATGGAAATTGATAAGGAGAATCACTTACCATCTTTTTTAATGAAGCAACATCCAGGTGGCAAGGGTAACCCAAAACAACCACGGGGACTTCAACGTAGACGCTCCCGTGTTACATTTGTTGAAGATGATGATATAGAGGCAACGATGAGTCACACTGTTGTAATTGAAAGCAAAGATAATGCTCAGCCTCTTGCACCCTCGGTTTCTGAAAATCAAGGTAGTGTTGCATTCATGGCATCTGCCGTTTCAAACATCTCGGATGACATGGAGCTCACTCTAAGCCAGACTGCTCCAATCAACGTAAAAGTTACAGGAAATATCACTCGCAATGTCCAGGCTGCTCTGGATCACAATAGATCCCATTATTTCTCTGAGGGTGACAATGCGATGGAGATGACGGGGGCATTTGATTTAACCGTTCGAGAAAAAGACCACACAATGAGTATGAATGAGCAATCTCAGTCTCCAATTCCCAAAATAAGAAGGATTTCCTCCTTTAATGTGATTGGAAATGGAGATACAACAGATCAAAACAAAGCTGGTTATTTTCAGAGCAATCTCTCAATAGCCAAAACTGCTAATTCTGATGATATGGAGATGACTGGGGCTTTAGATGTATCTATTCGAGAAAAAGAGGACATTCTGTTTCCCAAACTAAGCCGGATGTCCTCTTTCGATGCTTTTGAAAATGGAAAAATAGTGGATCAAAACAATTCTGGCAACAACATGATAGCTCCAACTGCTAATAATGATGATATGGAGATGACACAGTGCCAGACTCTTGTTTTCGAGGCCAAACTATCAAGTGGAAACAACTTAAGGAAGAGTTTACCTCTTGCGTCTGTATCCAGAACTGTTCGAGAAGATGAGCATGCAAGCAGTATCAAGGAGGAAGCTCTGCATCCAATTCCCAGAGTTAGCAAAATGTCCTGCTTTAATTTAGTTGGAAATAAAGAGATATTGGATCACAACAAATCAGGCCACCTCTCAATTGGCCAAACTGCAAATTCTGATGATATGGAGATGACACAGTGTCAAACTATTTTTCTCGAGGCTAAACAGGTCAGTGGAGACAAACCATTAAGCTCAAGGAAGAATTGGCCTCATACATCAGTATACAGTACTGAAGACAGTGATGGGATGGACATTACTCAAACGTTCACTGGGCGTATAATACAAAATGTCCTTTCAGCCACCAAGAAGGAAAGAGGTGAAAGCATTCTGATACCGGTTACAACTGCTACATCACCTAAACATAATGAGAGTGGCTGTATGGACTTGACATGCCAACCAAATACTTTTACTGGGATTTCTCCTCCAAGCCCTGATGTAATGGAATTGACTGGATGCAACACTATTAACATTGACTCAAACCAGATTTGGTTAGGGAGTGCTGATACAGATACAAGAAGAGTACCATTCTCTGCTAATCAAACAATCACTGTTGTTGAACCTATGGAGATGACTGAAGTACATATGGCACTTGTCAGTGAGCGAAAGCATAAAGCTTTTATGACTCGAAGAAAGTCAGGAGCAAGGATGGTGTCCTTGATGTGCGACCCTAAAAACACTGAAGCTGATAACTGTCAGACCAATTTCTCCAATCCTGATGACATGGACATGACACAATGTCAGACTGTTGTGCTTGAGGCTGAAAACTGCAAACCATTCAGTAAATCAAGGAAGAGTTTGAACCTTGAATCTATATCCTCCAGTCCTGATGTTGACGGTATGGAGATAACCCAGGCACTCACTGGCAGTATCATGTTAAAGAGCTTTGTATCCAATAAGGAAACGGAGCATGAGAGAAATCTGTTGCCTACAGCACAAAGTTGTCAAAAGCAGGATAAGTCTGATTGCGTGGAACTGAGATGTCAAGCCAGTGCATCAAATCTAGCTATGCCCTGTGTTGATGAAGAAATGGAATTAACAGGATGCAATACGATTGCAATTGACTCAAAAAGCACATTGGCAGCAAGTGCTTCAGAGATCAAAGCAAATGAAAGTGCACTTTGGGCATCAACATCTGTTTCTAGATGCACAGTGTCAAATGAAGATCAAAATGAGGTGAGTGAAGCTGCCAAGTGTGCTATTAACCATGTCTTCCCCTCAAAACATGCTTGTGACCTTAAATGCACCGACACAGAGACAATCTCCTATGACCCAGCTGAGATGGAAGTGGACAAATACTGCAAAATGGCACGTTCAAGCAATGTGATGATGACTGATGAAGAAAACGACATGCAGATTACAAAGATCCTTACAATGCCCATTGAAATGGAGAAAAGTGTTTTGTTTAACCAGAGAGAAGAAGCAAATATAAACACTTCCAATGTTTCTAGAAATGAAGAGGAGGGTCAAGCTCTTTGGTCTAACAAGGAACAAAGTACAAGCTCAGTCCAACTTGAAGGTTCCTCCTCAAATGAGTCCGTAGCTGATTCCTTCAGTAAAGAAGAACTACAACATACAAAAGCAAGACGAAGAAGTCTTGCAGATTTTCAAATGGAGCTTCAAAATATAAAACGCCGTATCCAGGAAGAGCAAAAAGTGATGACGGGAAGCACAACTGCACCTCTGCCTTCTTGTTCCTTCCCTGAGATTTCCCTTAAAGAGCAACGTGAAATGGAAATTTCCACTAAGCCAGCTTCAAATGTCACGCCTAACGTCAAGCAGAAAAATAATTCTGGTCAAAATGAGAAGACTACACCCTTTAGTCTTAAAAAGCCGTTCTCATCAAGGTTGTCATTGTGTGGTATCATGCCAAAACTACCGAAACGAGCTTCAACTGTAACTCCAAACAAAACTGTGACCATAAGTACTAATGATTTACAAAGTCTACAACTGGAGAAACATTTTGAAGTTGTTGAACAAAATAGCAACTGCAAAACAGTCAATATTAATGATGAAGAGTTTCCTGAAATGAGCAGTGAAGAAGACTTGTCAGGGAGTCTTGAAAATTGGCCAATTAACAAGCAAGATGAACTGGATGGTTCTTTGGCTGTACCTATAAATGAAGAGATTTTTGAGGATGATGTCTTTCAGTCAGGCACGAGAACAAGTCCATGTTTTAAAAGGCCGCATTCAGAGGAGCCTATAAATGAAGAGATTTTTGAGGATGATGTCTTTCAGTCAGGCACGAGCACAAGTCCATGTTTTAAAAGGCCGCATTCAGAGGAAGACCCTATTACAGCAGAGCAAACCAAGAAAGCCTACATTTCTGACATGGGGCCTGACTGTCATGAAGCTGCTGTACAGTGGGAAGGTAATTTTACAAGGCATGCCGCTCAGAATCCCAAGGCAAAGACAATTGAAGATACAGGAGTGTCTGAATCCACTCTCAGATACTCTCAGTTCGACTCTCATTTGGATGGGACGCTGGATCATGTATTTGATTTTAACAAGAAACTTGAGGATGGAAGCATCACAATGAACGAGTTCCTAAGCCACTTTGGTATCAACTTCGTCATCCACAGATCTAGACCAAGTGCTCTGCCTGTCAGTTGTAGGGCTGGAGATACACGCAGCATGGAAGATTTGCTCAAAGAGAAATACATATACCACCCCAAGCAGAGAGTGTATGAGCAAGACTGTAAGAACCTCACAGAGATAGTGGAGAGACTTAAAGAACGAATGCCTGAACAAGAGAAATCCCTGGGATGCATCAATGGAGCCCTTCAGCAACAGATATGCACTCTCTCTAAAGAACAATTAAAAAGCTTTGGATCCAAGTTGAAAGAGCGAAGGGTTTACTTTGGAAAGAGAAGCAAGGCACATTCTCATGAAATGAAAGGAGTCTTGTACTCAGAGCTCATAAAAACTACACAGAATGCAAAGCAGAGCCTGATATCTAAAATCAAAGAGACAGATGAAATGATGGAAGACTTGGATGGATGCATTAATGATTTAGAAACTGAACTTGCATCTGTAGAGGCCATGATTATGGGAGATCATCTTGATGCTCCTCAAACCAGACCAGCCTTAAAAGCCAAGGCAGAGGATTTGCAAAGGCTTAATTCAGCTATCGCTATGAAGGAGAGGGAAATTGGTGAGCTGGAGATTCAGCTGAGGACTTTGGAGGGCCAACAGGAGAAGCTACGAGGAGAATCAAGTAGCCTTAAGAGTCATCATGCAACCTTGAACAGTTTGAACGAGTGGCATCTTGATGCGACAGATGAAAGGGGTGCTTTGTTTACCTTCCTTCACAACACTGTGCATCTGCAAGTGAACCTGCAAACCCCTGCTGGAAAGGAATGGATGACTGAGGATGTGGAGCGAAATATAGATGTATGCTTCCAGTTGCAGCTGGATGTGGAAAAGTCTGAGTGTCATGCAAGCATGGTTCACAAGTTACTTGAACTATACCGTCAGTCTCAAACTCAGTGGACACAGAGGTACCCCACAACCCGACATTTACCAGAGCTTCTTCATGACATCAGTTTGGTGGTGGGTCGTCTCAGGCTCTTGGGTGAGGAGATTCACCGGCTGAAGAAGTGGGGAGGATTGAAGCTTCGCATCCTGAAGATCACCTGTATGGACACACGAGTTCATATCGTCTTCTCAAGCCTGAAAGCATTTGAAAAGTTTGAGTTAAATCTGATAGTCACTCCAGACTATCCCTTTGGACCACTTCACATACAGGACTTCAAAAAACACATGGGGAAAACAAGGTTGAGTCAAATTGAAGACATCCTATCATCAATCAAACCAGCCAAGAACTATCTGACAAAAGTCCTCAAGAAAATCCACGATGATCTCCTGTGCTAGGAAGCCTTGTTGTTTACTCTTTTCCTTTCAGTCTTTAAATGTTTGTATATATTGATGTTTGTATAATCAAAAAATAATTATTAAA

Function

symbol description
knl1 Predicted to be involved in attachment of spindle microtubules to kinetochore and protein localization to kinetochore. Predicted to act upstream of or within cell division. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly and primary autosomal recessive microcephaly 4. Orthologous to human KNL1 (kinetochore scaffold 1).
casc5 protein CASC5

NR:

description
Wu:fd18f09 protein, partial

GO: NA

KEGG:

id description
K11542 CASC5, KNL1; protein CASC5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_01963369_01973641.mRNA True 6179 mRNA 0.40 21 1963284 1974476

Neighbor

gene id symbol gene type direction distance location
CI01000300_01844908_01942907 DMD coding downstream 20377 1844298 ~ 1942907 (-)
CI01000300_01824226_01831566 NA coding downstream 131718 1823963 ~ 1831566 (-)
CI01000300_01812173_01822492 CFAP221 coding downstream 140792 1812146 ~ 1822492 (-)
CI01000300_01742156_01744802 NA coding downstream 218482 1742156 ~ 1744802 (-)
CI01000300_01733901_01736015 NA coding downstream 227262 1733660 ~ 1736022 (-)
CI01000300_01988184_02137544 SDK1B coding upstream 13597 1988073 ~ 2137544 (-)
CI01000300_02226964_02230406 NA coding upstream 252140 2226616 ~ 2232748 (-)
CI01000300_02321188_02321874 NA coding upstream 346664 2321140 ~ 2322976 (-)
CI01000300_02335842_02336855 NA coding upstream 361072 2335548 ~ 2337040 (-)
CI01000300_02345055_02356103 BRAT1 coding upstream 370531 2345007 ~ 2356303 (-)
G409380 NA non-coding downstream 178468 1772091 ~ 1784816 (-)
G409459 NA non-coding downstream 182452 1778501 ~ 1780832 (-)
G409454 NA non-coding downstream 199663 1763385 ~ 1763621 (-)
G409388 NA non-coding downstream 330456 1632490 ~ 1632828 (-)
G409424 NA non-coding downstream 344200 1618850 ~ 1619084 (-)
G409513 NA non-coding upstream 6254 1980730 ~ 1981204 (-)
G409515 NA non-coding upstream 7568 1982044 ~ 1982308 (-)
G409490 NA non-coding upstream 9457 1983933 ~ 1986053 (-)
G409498 NA non-coding upstream 34373 2008849 ~ 2009225 (-)
G409527 NA non-coding upstream 68364 2042840 ~ 2043304 (-)
G408318 NA other downstream 1676397 279917 ~ 286887 (-)
G409558 NA other upstream 312705 2287181 ~ 2288973 (-)
G409775 NA other upstream 888682 2863158 ~ 2863998 (-)
G410498 NA other upstream 1826663 3801139 ~ 3808207 (-)
CI01000300_04075307_04079312 NA other upstream 2102288 4074636 ~ 4080539 (-)
G411012 NA other upstream 2415844 4390320 ~ 4395121 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001052 knl1 coding NC_007112.7 CM002885.2 11086957 ~ 11104805 (-)