CI01000300_02356651_02369301 (EIF3B)


Basic Information

Item Value
gene id CI01000300_02356651_02369301
gene name EIF3B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 2356396 ~ 2370981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_02356651_02369301.mRNA
ACATAAAAAACTACGTGCAGAGCGTCGAAGCTTCCAGCTACGTATGCGCAAATTCTGCGCACGTTAATGTTCTTCAATAGCCTAACCGCCTCTCACTCACACACATGGTTACAGCAGACGCTTTAAGAGCTCCTAACTGCGCAGATAGGAGGCAATCAGCATCAATATTATCTGACGCATTTCTACTAGTTGTCTAACTAAAAGCAAACATACTGCATTCAAATTCAAGCCCGTCAAATGCAGGACACGGTAAATATGGCGGCTGAATCAGAATTTGATGAAGAAGAGGAGCCTTTGTTCAGCGATCCGGAGGATTTTGTGGAAGACATCGATGATGAAGAATTGTTGGAGGATGTTTTAAGGGAGAGACCTTTGGAGGCTGATGGGATTGATTCAGTGGTCGTGGTGGACAACGTTCCCCAGGTGGGCCCTGAACGTCTGGAGAAACTGAAAAATGTGATCCATAAAATCTTCTCCAAGTTTGGTAAAATCACTAACGAATTTTACCCTGAAGCGGCTGGGACCACCAAAGGGTATATCTTTCTGGAGTATTTGTCCCCTAACCAGGCTCTGGAAGCAGTTAAGAATGCAGATGGTTACAAGCTGGACAAACAGCACACATTCAGAGTAAATCTGTTCACAGATTTTGATAAGTACATGAACATCAGTGACCAATGGGAAAGCCCTGAAAAACAGCCTTTTAAAGACTTTGGCAACATGAGGCACTGGCTTGAGGATGCAGACTGTCGTGATCAATACAGTGTAATTTATGAATCAGGAGAACGAACTGCCATATTTTCCAGTGACCCAAAGGAGGTGATACTGGTTGAAGAGAGAGCTCGCTGGACAGAGACTTACGTCCGCTGGTCACCCAAAGGGACGTACCTGGCCACTTTTCACCAACGAGGAATTGCATTGTGGGGTGGAGAGAAGTTCAAGCAGATACAAAGATTCAGCCACCAGGGTGTGTCTCTCATTGACTTCTCCCCATGTGAGAGGTATGTGGTGACATTCAGCCCACTGATGGACACTAAAGAAGACCCTCAAGCCATCATCATCTGGGATATCCTGACCGGACAGAAGAAGCGAGGCTTCCATTGTGAGAGTTCAGCACACTGGCCTATTTTTAAGTGGAGTCAGGATGGGAAATTCTTTGCCAGAATGACACAAGACACTCTCAGTATCTATGAAACCCCTTCAATGGGCCTGCTAGATAAGAAGAGTTTAAAAATAAGTGGAATAAAAGATTTCTCTTGGTCACCGGGAGACAACATCATTGCCTTTTGGGTCCCAGAAGACAAGGACATTCCAGCCAGGGTAACGCTAATGCAGTTCCCATCCCGTTTAGAGATTCGGGTGCGGAATCTTTTCAACGTGGTGGACTGCAAGCTTCACTGGCAACGGCAGGGTGACTACTTGTGTGTGAAGGTGGACCGAACGCCCAGAGGAACACAGGGTGTCGTCACAAACTTTGAGATTTTCCGCATGAGAGAGAAACAGGTTCCTGTTGATGTGGTGGAGATGAAAGAGAGCATCATTGCATTTGCCTGGGAGCCCAACGGCAGTAAGTTTGCGGTACTACATGGAGAATCTCCCAGAATAAATGCCTCATTTTACCACGTCAAAAGCAACGGCAAGATTGAGCTCATAAAGATGTTTGATAAGCAGCAGGCCAACAGTATCTTTTGGAGTCCTCAGGGTGATATGCCTCTTCTTTTTCTGTGCAGTATGAACGGTGCGCTTGCATTCGTGGACACATCGGATTGTACCATTATGTATATCGCGGAGCATTACATGGCCTCTGATGTGGAATGGGACCCTACAGGCAGATATGTGGTGACTTCTGTTTCCTGGTGGAGCCACAAAGTGGACAATGCATACTGGCTTTGGACGTTCCAGGGACGCCTTCTGCAAAAGAACAACAAAGACAGATTCTGCCAGTTGTTATGGAGACCACGCCCTCCTACTTTACTCAGTCAAGATCAAATAAAGGCAATTAAGAAGGACCTCAAGAAGTATTCAAAAATCTTTGAGCAAAAGGACAGACTGAGCCAATCCAAAGCTTCCAAGGAGTTAGTGGACAAACGTCATCTGATGATGGAAGAATACAGGCAGTACAAAGAAAGTGCCATTCAGCTTTACAACCAGCAGAGAGAGCTGCGCCTTCAGCTCAGAAAAGGTGTGGACACAGATGAGCTGGACAGTAATGTGGAGGACTGGGAAGAGGAAACCATCGAGTTCTTCATCAGTGAAGAGATCATTTCTATCTGAGATCTGAAGTAGACCTACATGGAAAGCACCCATGTTTCCAGCTCTAAGACAAAATACTCACCCCCAGAGGTCACCGCCACAGGACCTTTACAAGTGCTTTGTATGAGAGACACTATGTTGACATGCACAGTTATAATAGAGCGGGGTTTTTGCGTAGTCGAGCAAAAAATTCACACAAGTATGCAAATGAAAATTTAAAGTCGCCATGAAACAAATTCTTGGCGACTTGGCGAAAGTTGCGATTGGCTTTTCTTCCCTATTGTGATGTATATCCAAGTAAAACAGCTTCTCGAACAAGAAAAAATTATGGGTGGGACTTAATTTTGTCCATCAGGAATTGATTGGATGGTTGTGGTTTGCTATTGCTGTGATGTCATGTGAGTGACAGGTTGTCCCGCCCTCACGTCAGTAAACCCGTCATCACAGAAGAGAAGAGATGTCACTGCAAGAGGGAGGAGAAGTTATTTTGATTAAAGATTATGAAGGCACATTAATTAAAAAAAAAAAAAAAATGATGTGCACGGATAAATCATTTATAATAAATACTGCATGCAATATTCCATAAACCAGGAATTATCCATTTTGATTTCATGGTGACTTTAAAGAATGAAAAAACCTCTGTGTTTTGGAGCAACTGTTCAAAGCTGAGGCCAACTGTAGTCTGATTAATGTTTAAACATGCTGGACGAAGCTGAGCTAGATCTGTTGACTTCGCAACAACCAGACTGGTACAATTTCAGTCGGACTAAAGCATTTACATGACATTTAAAATTGATGAATTGTTGTTTAAGTCCAACTAAATTCAAACTTTTAAACACATTTACTGATTCACATATTCCTGCTGAGAAGGGATGTTGTTTAATTTTAAGATGAATTTTAAGTAAGAGCTCATATTCTTAAAGGGTTGGTTCACCAAACTTAAATTTCTGTCATTAATTACTCACCCTCATGCCGTTCCACACCCGTAAGACCTTCGTTCATCTTCAGAACACATATTAAGGTATTTTGATGAAATCTGAGAAGTTTTTTATCCTCCATTGAAAGCACTGAAATGATCACATTCAAGGTCAAGAAAAGTAGTAAAAACATTGTTAAAATAGTCCACGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCGCAAAAATCAAACCAAAATAACGACTTTAACAAATTTGTCTCTCCCCTGTCATTCTGCTATGCTATTTACGTTGCAGTGCTTCCAGGTTCTACGTCAGAATGACTATTTTAATGATGTTTTTACTACTTTTCTGGACCTTGAATGTGGTAATTTGATTGCTTTCAATGGAGGATAAAAAAAACTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCAAAGATGAACGAAGGTCTTACAGGTGTGGAACGACATGAAGGTGTGTAATTAATGAGAGAAATTTCATTTTTGGGTGAACTATCCCTTTAAATCTCCCTTCATACAATGTTCTTGTAGCATTCGCTGAAAGCAGTAAAGGGCAGTGATTTATCATTTGCTATTCTTCTGACAGAGCAAGAAAAGTTTTGTGGGTTATTTTGTGGGTTATTTTCTTTGTATTTTACTTGAATTTCCCATAGAATGAAATTGTTTTAAAGCTTCCATACAAACATACAAGATTGTGTATGTTTACTCCCCTGTA
>TU470058
CAAGAAAAGTAGTAAAAACATTGTTAAAATAGTCCACGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCGCAAAAATCAAACCAAAATAACGACTTTAACAAATTTGTCTCTCCCCTGTCATTCTGCTATGCTATTTACGTTGCAGTGCTTCCAGGTTCTACGTCAGAATGACTATTTTAATGATGTTTTTACTACTTTTCTGGACCTTGAATGTGGTAATTTGATTGCTTTCAATGGAGGAT

Function

symbol description
eif3b Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in several processes, including IRES-dependent viral translational initiation; translational initiation; and viral translational termination-reinitiation. Located in extracellular exosome. Part of eukaryotic translation initiation factor 3 complex.

GO:

id name namespace
GO:0005829 cytosol cellular_component

KEGG:

id description
K03253 EIF3B; translation initiation factor 3 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_02356651_02369301.mRNA False 3951 mRNA 0.42 18 2356396 2370981
TU470058 True 266 lncRNA 0.35 1 2370370 2370635

Neighbor

gene id symbol gene type direction distance location
CI01000300_02340225_02344792 NA coding upstream 11420 2338788 ~ 2344976 (+)
CI01000300_02313596_02320912 NA coding upstream 35308 2312515 ~ 2321088 (+)
CI01000300_01976057_01980856 NA coding upstream 375209 1976057 ~ 1981187 (+)
CI01000300_01801423_01807504 CNGA3 coding upstream 548271 1801423 ~ 1808125 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding upstream 572595 1771784 ~ 1783801 (+)
CI01000300_02372157_02389226 NA coding downstream 786 2371767 ~ 2389411 (+)
CI01000300_02391089_02392297 CHST12B coding downstream 19537 2390518 ~ 2392344 (+)
CI01000300_02477372_02477542 NA coding downstream 106330 2477311 ~ 2477549 (+)
CI01000300_02481007_02486342 SNX8B coding downstream 107893 2478874 ~ 2487067 (+)
CI01000300_02529181_02537776 TSPAN5.S, TSPAN5.L, TSPAN5A, TSPAN5B, TSPAN5, TSN5 coding downstream 158200 2529181 ~ 2537776 (+)
G409141 NA non-coding upstream 18609 2337563 ~ 2337787 (+)
G409117 NA non-coding upstream 49507 2305069 ~ 2306889 (+)
G409028 NA non-coding upstream 392299 1963272 ~ 1964097 (+)
G409018 NA non-coding upstream 396806 1930231 ~ 1959590 (+)
G409006 NA non-coding upstream 477523 1878286 ~ 1878873 (+)
G409155 NA non-coding downstream 35530 2406511 ~ 2406856 (+)
G409174 NA non-coding downstream 90109 2461090 ~ 2461979 (+)
G409205 NA non-coding downstream 93498 2464479 ~ 2465111 (+)
G409172 NA non-coding downstream 122468 2493449 ~ 2505501 (+)
G409246 NA non-coding downstream 214718 2585699 ~ 2585913 (+)
CI01000300_01753916_01754815 NA other upstream 597360 1753916 ~ 1754980 (+)
G408910 NA other upstream 721427 1633030 ~ 1634969 (+)
G408498 NA other upstream 1335662 1017067 ~ 1020734 (+)
G408510 NA other upstream 1379297 976600 ~ 977099 (+)
G409984 NA other downstream 900704 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 1530207 3901148 ~ 3902892 (+)
G410382 NA other downstream 1752717 4123698 ~ 4124416 (+)
G410388 NA other downstream 1824665 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 3520086 5891021 ~ 5892824 (+)

Expression


Co-expression Network