CI01000300_03954605_03969070 (CRMP1)


Basic Information

Item Value
gene id CI01000300_03954605_03969070
gene name CRMP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 3954605 ~ 3970439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_03954605_03969070.mRNA
ATGTCGGACTGTAGGCGACAGTGGAACCGGGAGGATGAGCTCCCTGTGTACCTGGCTAAACCCATCTCGACTGGACCCAACCAGCGTCACAAGTCTCATGGAATGTTCAGCTCCGTCGAGGGCGCGTATGATAGCAAGACTATCGATTTTGACCAGTACTCCGTCGGGAGGAAGGGGAACAGGACCTCACGGAGCAGTAGCAGGGAACGCATTGTGGATGGGGATTTTGAAGCCTATGAGATCAGCGGGGGGTCGTTCATCAGCTCCCCGGGCGAGAGGGACGACGGGCGTCCTGAAATCACGGATCAGACTGGAAAGGAATGTCGTTATGAGCAAAACAATGGGAAGAGTGAGCGGCTGCTGATTAAAGGTGGAAGAGTGGTTAATGATGATCAGTCCCTATATGCTGACATTTACATTGAAGATGGACTTATTAAACAGGTTGGGGAGAACCTGATTGTGCCGGGGGGTGTGAAGGTGATTGAGGCTAATGGGTGTATGGTGATCCCTGGAGGTATTGATGTGAACACCTGCCTGCATAAGCCTTACCTGGGCACTCCACCTGTGGATGACTTCTATCAGGGCACCAAAGCTGCTCTAGCAGGTGGAACCACCATGATCATTGACCATGTGACTCCACAGCCCGGCGACAGTCTATTGGAGGCCTTTGAGAAGTGGCAGGATGTGGCTGATAAGAAGTCCTGCTGTGATTATTCACTTCATGTGGATATCCCACATTGGCATGAAGGTGTGAAGGAGGAGCTGGAACAGCTGGTACAGGAAAAAGGAATCAACTCTTTCCAAGTGTATATGGCTTACAAAGGGTTTTTCCAAATGCCTGACTCTCAGTTGTATGAAGCGTTCTCCTTCCTTAAGGAGCTGGGGGCAGTGGTGCTGGTGCACGCAGAGAATGGAGACCTGATAGCACAGGAACAAAGCAAAATCTTGGGAATGGGCATCACTGGTCCAGAGGGCCACCCACTGAGCCGTCCAGAGGAGCTGGAGGCAGAGGCTGTTTTCCGTGCCATCACCCTCGGCAACCGAGTGAACTGCCCTGTGTACATCACTAAAGTGATGAGTAAGAGTGCAGCTGATACTGTGGCCAATGCACGGAAGAAAGGCTCTGTTGTTTTTGGTGAGCCAATCACAGCCAGCTTGGCAACAGATGGATCACACTATTGGAGCAAAAACTGGGCGAAAGCAGCAGCCTATGTGACCTCTCCACCCCTCAGCCCTGACCAGACGACACCTGACCACCTTAACTCTCTACTGGCCTGTGGGGATCTGCAGGTTGTGGGCAGTGGACATTGTGCTTACAGCACCTCTCAAAAGGCCATAGGGAAAGACAACTTTACCCTTATACCCGAGGGGACCAATGGAGTGGAGGAGAGAATGGGTTTTGTTTGGGACAAATCTGTGGCCATGGGGAAGATGGATGAAAACCAGTTTGTTGCAGTTACAAGCACTAATGCAGCCAAAATCTTCAACCTGTACCCCCGGAAGGGTCGGATAGCAGTGGGTTCAGATGCTGATATTGTTATCTGGGACCCCGCCAAGATCAAGACCATCACAGCTAAAGCACAGCAGTCGGCTCTTGAGTATAATATTTTTGAGGGGATGGAGTGTCGTGGCGGTCCAGTGTATGTGGTCAGTCAGGGCAGGATTGTGTTTGAGGAAGGGAAGCTTCAGGTTCAGCAGGGGACTGGACGTTTCATCTCCCGCAAACCTTTCCCTGACTTTGCCTACCAGCGCATTACGTACCGCAACAAGGGGCTCAAACCGATGACAACATTCCTCGGCGCTCTGGCCACCGCATCGTAGCTCCCCCTGGTGGTCGTTCCAACATCACCAGCCTTGGTTGAGCCTTCTGCAGCTCCCAAGTGACTTTGAAAGAGAGTGTGTGTATATTTGTGTGTGCGTGCGTGTGTGACAAATCATCAGTATTCTCCTCTCACAGGGCCATGCTATAAACAGATTTTTGTGCATCGCATGCATGTCAAAATATCACTCTACCTTTACCTGTGCAGTAAATGTCCCATCCACAGTGAATATTACTGTGTACATTGTGCACATCAGACTCACTGCTAAAAGACCTAGAAAAATATATATAGATAGCTAGACAATCACTATAAAATACTCTATATCCATAACAACTTTTTTAAAAAGTAGCATTTAAACAATGCTAATATAACTACTCATATTTTTAAATCGAGCCCCTCATTCTGCTAATGTGACCCCAGTGTTTGTGACAGTGTTGAAAATGTCCTGCTATAAAGCCCTGTGAAGCTTGTCGTTGGTCATCCCACAAAATGGTGCTCTTCCTACTGGACAACTTACTGAACTAAAGATAACTTATTAGTAATTTTGAGGGAAAAGTGCTATGGAATGCAGTTCTGAGATCAGTTTAGGCACAGATGTACTGCTAATAAGTACATTCTAAAGCTGAGTGAAGATCTGCCCTTATAAGCACTTTTAACTCTCATGTTCTCTGTGCACTGAAATGTTTTGAATTCTGTGTTATCAGTCTTTTGTGGTAAAGAATGGTGATGGATTGCATGATTTCACTTTTAGATGTAGGTAATATTCACATCTAATCTTTAATTCTTACTCTCTTTATACTTTGAAGGATAATTTTATTTTTCATCTTATTAAATTTGAATCGTTTTACAAGAAAGGTTTGTTATATCACTTTTTATTTTCATTTTAGTAAAAAGGCTGCATGCAGCTCTTAGCTGTGTAGATTATGCTTATTGCAAGATTAGATGTTGACTAGAGAAGGTATTCATTACCTCAGTATCACAAATGCAAAATCAACTATATATATGCAGGAAGAGCAAGTCACACATGCATTCAGAAAGAGCTGAAAAGGCTTTTATCTAATATGCCTGTTTTTTCTTCTATTGTGAGATTTCTACAGTATTGCTCCACATCCAAACGGCACTAGCCTAGTCACTGTGTACACTAAAAGTCTTAACACTAAATTTCCTCTAGATAAAGAGTGATTCCTTTTGTTTTGGACCAATACAAGGCCAATTCCAAGTCTGCTGTATTGCTTTCATACCCTGTTGTGATTTCGTATTGCCTATGGTATTTATAGTGTTTATGACCGATGCCATTTTAGTTTCTGTAGGCTGATATCCACTAATGCACTCACTGACTGTTGCTAATGATATCACTTTGATATGGTGAA

Function

symbol description
crmp1 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to act upstream of or within axon guidance and microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Is expressed in brain and retina. Orthologous to human CRMP1 (collapsin response mediator protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_03954605_03969070.mRNA True 3190 mRNA 0.45 13 3954605 3970439

Neighbor

gene id symbol gene type direction distance location
CI01000300_03924558_03934407 PPP2R2CA, PPP2R2C coding upstream 19245 3924558 ~ 3935360 (+)
CI01000300_03901275_03902800 NA coding upstream 51713 3901148 ~ 3902892 (+)
CI01000300_03773519_03831065 NA coding upstream 123183 3773362 ~ 3831422 (+)
CI01000300_03769789_03773233 NA coding upstream 181343 3768199 ~ 3773262 (+)
CI01000300_03752633_03755353 NA coding upstream 197745 3752633 ~ 3756860 (+)
CI01000300_03972562_03976190 NA coding downstream 2123 3972562 ~ 3976225 (+)
CI01000300_03981015_03991839 NA coding downstream 10576 3981015 ~ 3992010 (+)
CI01000300_03994394_03997804 CHIC2 coding downstream 23955 3994394 ~ 3998763 (+)
CI01000300_04008515_04015444 SLC34A2A coding downstream 36538 4006977 ~ 4015556 (+)
CI01000300_04021130_04027987 RBPJ.S, RBPJ, RBPJA coding downstream 49436 4019875 ~ 4029609 (+)
G410354 NA non-coding upstream 1191 3953176 ~ 3953414 (+)
G410353 NA non-coding upstream 1560 3952830 ~ 3953045 (+)
G410323 NA non-coding upstream 14923 3939037 ~ 3939682 (+)
G410320 NA non-coding upstream 15658 3916761 ~ 3938947 (+)
G410345 NA non-coding upstream 40612 3911374 ~ 3913993 (+)
G410359 NA non-coding downstream 8605 3979044 ~ 3979269 (+)
G410366 NA non-coding downstream 49097 4019536 ~ 4019741 (+)
G410383 NA non-coding downstream 80008 4050447 ~ 4053321 (+)
G410368 NA non-coding downstream 112579 4083018 ~ 4085182 (+)
G410375 NA non-coding downstream 156737 4127176 ~ 4129355 (+)
G409984 NA other upstream 682207 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1640711 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2195569 1753916 ~ 1754980 (+)
G408910 NA other upstream 2319636 1633030 ~ 1634969 (+)
G410382 NA other downstream 153259 4123698 ~ 4124416 (+)
G410388 NA other downstream 225207 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1920628 5891021 ~ 5892824 (+)
G411777 NA other downstream 2498806 6469245 ~ 6469705 (+)
G413459 NA other downstream 4974044 8857687 ~ 8948603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000183 crmp1 coding NC_007112.7 CM002885.2 14348399 ~ 14364710 (+)