CI01000300_04021130_04027987 (RBPJ.S, RBPJ, RBPJA)


Basic Information

Item Value
gene id CI01000300_04021130_04027987
gene name RBPJ.S, RBPJ, RBPJA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4019875 ~ 4029609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_04021130_04027987.mRNA
GTATAAATGTGTATGTATGCCAACAAAATGTCAGATTTTCTTAAAATGTAATATCCACACAATTATGTAGCTTTAGTCATTAAAATGTGCCCAAAGACTTAATGAACTCTTGAACTCGTCACTCATATAATGAAGGACAAGATACATAATCCTTATCTAAGTAGTCATTTAGCGGCCACATTAGCATTTGCTTCTTACAAATCAAGCTGAGCCTTGTTCAGGGATCAGTGATGATCATGGCTGGCTTCTTGAGTAGATCAAACTAGCAACCTTCTGATTACAAACCATGCTATTGATAGCAAAAAAAATATTTTTAATATTTAGCTTCATTTTGTTGTTTTGAGTTTAAAAAGTGCCACTCAGTTAAAACTGAAGAGACACTATTTTATAAACAACAACAACAAAAACATCTCAGTTTCAAAATGAACCATGTATTTGTTAAGTAATAAATGGAGTTTAGTGAAAGGGGATTTTTTTTTTATTTAGTTCATTTTTGTGAGTGTGTATGTAATATTACAGACCAAAGCCACTTAAATATGAACCTACTTCTTTTATTGTGTGGTCTAGTATTGGGAATATTTTGTCCTGTTGTTCAAACTTTTTTTGTTATGTCTGTCTTTTCTCAGTCATCCACTTATGCTCGTTTTAACACTTGTAAGGCATAGCAGCATTTCCACAGTGAAGCAATACTGCCATCTGGTGATATGAAAACAGTTTAGTGGGTATTACCGATCCATTGCATTTATCACACTACATATAATATGTAGGTTTGTAATTTATAAGTGCTTTCATAATGATTACTGAAACGTATGCAATTGAACTATTCTTAAAATATTCTATTCTTATTTTTAATAACAACATACTTTTTTAACTGCTCCACGTCAGATCAATATTTCATGGTGTCGGTGCCCCAGTCCCCGAGCTTCCTTCCTTCCAGAAATCTTTTTCTCACGGCCCGCGCTTAAAAGGTGCGGTCTGTCTTCCCATCGTGAGAACTTTCACACGCGTTTAGCTGGCAGCCGTCCGCAACTTACTCTCGCGATGACAAGGGACTCTCTCTCATACGCTCCCATAATAAGCGACGGGGAATTCTCGCGTGACTTCAGAACTTTCCCACGCCTGTAACACCCCCCACCCTTTCCTGCATGATTTCTCACAGTGCCCCTCCCCCTCGTCTAAATGCAGTCTGTTGCAATGTGGTGCGGAGCGGGGGAAATCTCGCGATTGTTGGCGTTATTAGAGAGAGTTGGTGAAGATGGCGCCTGTTGTGACAGGGAAGTTTGGGGAGCTCCCTCAGCCAAAGCGTTTAACAAGAGAGGCGATGCGCAACTACTTGAAGGAGAGAGGAGATCAGACAGTCCTCATACTGCATGCAAAAGTCGCACAGAAATCGTACGGCAATGAAAAAAGATTCTTCTGTCCTCCACCATGTGTGTACCTAATGGGTTGTGGCTGGAAGAAAAAGAAGGAGCAGATGGAGAAAGAGGGCTGCTCGGAGCAAGAGTCTCAGCCTTGTGCCTTTATCGGCATTGGAAACAGTGAACAAGAAATGCAGCAGCTCAACTTGGAGGGCAAGAATTTTTGCACAGCAAAAACATTATACATTTCTGACTCGGACAAACGTAAGCACTTCATGCTGTCGGTGAAAATGTTCTACGGGAATAGTGCGGATATCGGTGTCTTCCTCAGCAAACGAATCAAGGTCATCTCCAAACCTTCCAAAAAGAAGCAGTCACTGAAGAATGCAGACCTGGATGATGATGAATCAGAGGGAGAAGAGTTTACAGTCAGAGACGGTTACATCCATTACGGTCAGACGGTGAAGCTGGTGTGCTCCGTGACAGGCATGGCTCTACCCCGACTGATTATTCGTAAAGTGGACAAGCAGACAGCGCTAATGGATGCAGACGATCCTGTGTCCCAACTACATAAATGTGCCTTCTACCTTAAAGATACAGAGAGGATGTACCTCTGCCTGTCACAGGAGAGGATAATTCAGTTCCAGGCAACACCCTGTCCCAAAGAAACAAACAAAGAAATGATCAACGATGGGGCGTCATGGACAATCATCAGCACAGACAAAGCAGAGTACACTTTCTATGAGGGCATGGGCCCTGTACCCTCACCTGTCACACCCGTGCCCGTTGTTGAGAGTTTACAGCTGAATGGAGGAGGAGATGTTGCCATGCTGGAACTGACAGGACAGAACTTCACACCTAACCTCAGAGTCTGGTTCGGAGATGTGGAGGCAGACACTATGTACAGGTGTGGCGAAAGTGTGCTCTGTGTGGTTCCTGACATCTCTGCGTTCCGTGAGGGGTGGCGTTGGGTTCGGCAGCCAGTGCAGGTTCCTGTGACTTTGGTCCGTAATGACGGCATCATCTACTCCACGGCTTTGACATTTACCTACACGCCGGAGCCGGGACCGCGCCCTCACTGCAGCGCTGCTGGAGCCATACTGCGGGCCAACAGCAACTCCTCCACCTCTCCATCTTCATCCTCCTCATCCTCCAGCCTACTGCTGCAGTCAGCTGTTGACAGCCAGGCGGGATATGCTGCAGCAGGGAGCGTGTCTTCATCTTCCTCTTCCTCGGCTATGTCTGTCTCCTAACCTGGGAATCTTGGTTCGCGTTTGCGTGTGCGAGTAAGTGAACCTTTGTGAGAAATGGTGATTCGTCAGTTCGTAGACTTCCTGCATAGATTCATGGGATACCGATCACAAAAATGGATAATGGTGCCACAGAGAGAGAAGCAAAAGAGAGACAAGACTTCACACAAAGACTGGACAGAACAAATGAAGGCATCTCCTTTCTCTCTCTTTGTTGCGGTTCTTTTTCAATCTGTTTCCTCATGTCAGAGGAAGTGTCAACAGAAGTGATGTTTGCCGTGGATCAAGATGCCACAGGATCAATGCATTAGCCTTACACGAAAACAAAAAACAATCAGTCAAAAAAGAAAGAAAAAAAAACACCTCTTCAAAACAAAGCCTTTTCTAAGTAATGGCTTTGCGAGATGATGTTTTCTACTAAAGGGCTTAATGCACTGTTTCGCCAGGCTTGGAAGAAAAGTTATCATAGTAATATAGTTTTTACGGACCAAGGAATATTATTATTATTATTATTATTATTATTTTTATTGATATATAATTTTATAAGCTTTAGCTAAGGTACATTTTTCACCTTTTTAAGTTTTATAACATATAGTAAACTTTTGTTACCAAATAGTTTTGTATATTTCTTGTGAGCGTTTGGGCTCAGAAGGAAGAGGTTCATGCGTTTTGAAAGCCTGAACTCATAGCTGCCTTTACTCCTCTTGGCAAATGCCTTAAATCTTCTGGAGTTTCACCAGACCCATGTCTCTTTTGTAATAATAATTTTGTCATGTATATTAGTCCCATTCTTTTTAATTTTTTCTCCACTAAACCGAGGTGTAATATTGATGCCATTTTTGCGTATTTGGGAGAAGGTGACTCTTCTGCTTCTTTAAACTTTTCTCATATGAAGTCTTTAACACAAAAGCTTTAACTGACTTTGTTGGTAGGCCTTACGTGCCATATCGTACTCATCAGATACACATAGCCATTGATCTGGCCCTTTTTCATTGGCTATAGATGTTTAAACTGCCAACATAAAAACATCCCACACCAAATGGATTACCTTTAGTTGGACATAAGCGCACAAAATTCATCTGTTGCTTTTTTTGGGGGTCAACGATTTTTAGTTAATTGGTTTATTCAAATCCTGTGGTAGGGAAGGGACTGTACCAGTCTCATTTGCATATCATTCATGCTTTCGGTGTCATGATTATTGTTAGTATCATACTAAAATCAGTGTGTAGGAAAATTGCTGCTTTGTTGTCATGTGGTTAAACCATATAGAGAAGGGAGTTTGGGGAAGTACAGTTACAAGTAGCCCTGACTGTTTTTGTCTAGGAATGAAAAGTTTGGAGTCTCTCAGTGCTTCTAGATACCAACCAATTAGTGGTTTGCCTGACTGACTAGTTGAATAATTGGTCTTATAGAAGCCTTTTAATTGGGCTGGTTTCTCGTTCACCGTACCCTGATCAGACATTTTACTTAAGAGTTTACATAAGGTGTGCTCTTGTTTTTGAAAACGGCTAGATGGAGCATAACTGGAACAAATTGCTTTTAATATATGTAGTTAACCACTTTTCAACTAAATGTGGCATCTTAAAAACACTCATACTGGGATGCTCAAATGGATTGTCACACCA

Function

symbol description
rbpja Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; blood vessel development; and embryonic pattern specification. Predicted to be located in nucleus. Predicted to be part of MAML1-RBP-Jkappa- ICN1 complex. Is expressed in head; midbrain; and otic vesicle. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and dilated cardiomyopathy. Orthologous to human RBPJ (recombination signal binding protein for immunoglobulin kappa J region).
rbpj Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription from RNA polymerase II promoter in response to hypoxia; and positive regulation of transcription of Notch receptor target. Located in cytoplasm; nucleolus; and nucleoplasm. Part of MAML1-RBP-Jkappa- ICN1 complex and transcription repressor complex. Implicated in Adams-Oliver syndrome and dilated cardiomyopathy.

GO:

id name namespace
GO:0060716 labyrinthine layer blood vessel development biological_process

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_04021130_04027987.mRNA True 4233 mRNA 0.42 10 4019875 4029609

Neighbor

gene id symbol gene type direction distance location
CI01000300_04008515_04015444 SLC34A2A coding upstream 4319 4006977 ~ 4015556 (+)
CI01000300_03994394_03997804 CHIC2 coding upstream 21112 3994394 ~ 3998763 (+)
CI01000300_03981015_03991839 NA coding upstream 27865 3981015 ~ 3992010 (+)
CI01000300_03972562_03976190 NA coding upstream 43650 3972562 ~ 3976225 (+)
CI01000300_03954605_03969070 CRMP1 coding upstream 49436 3954605 ~ 3970439 (+)
CI01000300_04035454_04049805 STIM2A coding downstream 4708 4034317 ~ 4049821 (+)
CI01000300_04054526_04057476 NA coding downstream 23889 4053498 ~ 4057513 (+)
CI01000300_04100876_04103178 NA coding downstream 71267 4100876 ~ 4104415 (+)
CI01000300_04105718_04107800 NA coding downstream 76109 4105718 ~ 4107849 (+)
CI01000300_04211928_04219961 NA coding downstream 181560 4211169 ~ 4220143 (+)
G410366 NA non-coding upstream 134 4019536 ~ 4019741 (+)
G410359 NA non-coding upstream 40606 3979044 ~ 3979269 (+)
G410354 NA non-coding upstream 66461 3953176 ~ 3953414 (+)
G410353 NA non-coding upstream 66830 3952830 ~ 3953045 (+)
G410323 NA non-coding upstream 80193 3939037 ~ 3939682 (+)
G410383 NA non-coding downstream 20838 4050447 ~ 4053321 (+)
G410368 NA non-coding downstream 53409 4083018 ~ 4085182 (+)
G410375 NA non-coding downstream 97567 4127176 ~ 4129355 (+)
G410649 NA non-coding downstream 240706 4270315 ~ 4270720 (+)
G410659 NA non-coding downstream 277961 4307570 ~ 4307813 (+)
CI01000300_03901275_03902800 NA other upstream 117724 3901148 ~ 3902892 (+)
G409984 NA other upstream 747477 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1705981 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2260839 1753916 ~ 1754980 (+)
G408910 NA other upstream 2384906 1633030 ~ 1634969 (+)
G410382 NA other downstream 94089 4123698 ~ 4124416 (+)
G410388 NA other downstream 166037 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1861458 5891021 ~ 5892824 (+)
G411777 NA other downstream 2439636 6469245 ~ 6469705 (+)
G413459 NA other downstream 4914874 8857687 ~ 8948603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000188 rbpja coding NC_007112.7 CM002885.2 14454663 ~ 14464020 (+)