CI01000300_04035454_04049805 (STIM2A)


Basic Information

Item Value
gene id CI01000300_04035454_04049805
gene name STIM2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4034317 ~ 4049821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_04035454_04049805.mRNA
CTTTAAAGAGATGGTTCACCCAAATTCCAAAAAATCAAATCCAAAAAAGATATTTTTAAGAATATTTTAACTGTTTTTGTCTATTCAATGGGAGCCATTAGGTTCCAAAATTAAATAAATAAATAAAAATCATTAGCAGCATTATCAACAACAATAAAACAGGCTATTATATCAAACTACTTTAGTCAGCATTTCTTCTTAGACATTTTTTACTTTAATCCCAACAAAAATATCCAAATAAATGTTTATTCACAAATTAAAGTGTTCATTATACTTTCAGTGCATTCAAGTAATTTTTGTATGAATTTCATTTTTATTTAGTTTTAAACGCACGTCATTTAGCCGTTAATGAATAGTTAATTATATAATTTATTTTAATTAGTTAATACGTTTCTTGGTAAAGTTCTTGGAGCTTCCAATCACGTAAACTAATTAATATTCATATTTCAAGTCAACGTCTTAGCAAATCAGTTTACTCGGCAAGCGCCACGCAATCTAATTAATATTCATGAGTCAGACGCCGCTCAAGGATTAGTAAATTCGCTTTTGGCTTTGGAAGAGCAGACGCATGCAAAATACGAGCAAACAAAGTTTGGTGACATTTAGTAACTGGAACACTTTTATGGACACTCATTATCCAAACGTTTCCAGAGAGAAGTACTATCGTTCATAAGGAACTTTATTCTTAAGGAACCTGACTTTCAGAAGGACTCTATTCTTTGTCATAGTATTTTTATAGGCCCTATCTAACGCTGTGTTTTGAAAGTGGAACACGTTCTTTCTTTAGAATTTGTTTTTCAAAGTCGTGTTTATTATTCTGTTTACTTTGTTCCTCCATTTCTTTTGGATGTAACAACGAAACGTCATTGGCAAAACCAGATTTTGGGATGTATCTAGCTTTTTAAATGTTGTGACTTATCCTTATCCTTTGGAGTTGTAAACAAACACCTAGAACCGTTTTTCGTTTTTTTTTTTTTTTTATTTATTTGTGAAATGACCACACTGTTGCTTTTTTAACCGGAGGGCGATACCTTTTCTTGGAGCTGGAGCTGTTTATAGCATCACTATCACGTAACGTTGCATTTGGACACACGTGTTTTTTAAATCATAGACAGTAAGTGGTACTTGAACCCTGCAATGCAAAAGTTCTGCCTTACCGTACTGCTCGTGCTGCGCGGGCTGATCATCTGCGTCTGTTCCAGCGATGAAGCGCAGCACACCGGGCTGTACAAGGACACAACTGTGACCTCAACAGGCACGTGTGCTCGACCAAACGATGTTAATATTCATAATTGTATTAAAGTTAATATTTGCTACGCCTCAGAATGCTCCCTGCATCATGTGAATAATATCAAAAATCCATGTCTGCAAGTGAGTCCTCCATGTATGACGGAGGCTGACCGCTTCAGTCTGGAGGCTCTTCAGCACATCCACAGAGAGATGGATGACGATCAGGATGGAGGCATTGAGGTGGAGGAGAGTGTCGAGTTCATCATAGAAGATATGCAGCAGCAACAACAGGCAAACAAGCACAGTAAACTCCATCAAGAGGACCAGCATATCACTTTGGAGGAGCTTTGGAGGGGCTGGAAATCTTCTGAGGTTCATAACTGGACTCAGGAGGATGTCTTGAGGTGGCTAAGAGAGTTTGTTGAGTTGCCTCAGTATGAAAAGGGCTTCAGAGAGCTGCGTGTCAATGGAAACACCTTGCCAAGGATTGCTTCCAATGAGCCATCCTTTATGAGCTCTTTTCTGAAGATCCAGGACCAGCAACACAAACAAAAACTCAAGCTCAAAGCCCTGGATGTAGTGCTGTTTGGCCCACCTACAAGACCTCCACACAACTGGATGAAAGACCTGCTTCTGATAGTGTCAATAGTAATGGGGATTGGTGGATGCTGGTTTGCACGAGTACAGAATAAGGCATCTAAGGTACATATTTCGAAGATGATGAAGGACCTGGAAAGCTTGCAGACAGCTGAACAAAGCCTCAGAGACTTACAGGAGCAGTTGGAAAAGGCCCAGGAAGAGAAGCGCACAGTGGCGGTAGAGAAAAAGAATTTAGAAGAAAAGATGAGGGACGAGATTCAAGGTGCTCAGGAAGAGGCCAACCGCCTGCACAGACTCCGAGATGGAGCTGTGAGTGAACTCAGCCGTCTTCGGTATGCAGAGGAAGAGCTTGAACAGGTACGTGATGCACTAAAGAGGGCAGAGAAAGACATGCAGTCCCTTTGGGCAGTTCCTGAATCTTTGCAGCTGTGGCTACAGCTCACCTATGAGGTGGAAGTCCAGTACTACAACGTCAAGAAGCAAAGTGCAGAACAACAACTAGTCACAGCTAAAGATGAGGCTGAGAAGATCAAGAAAAAAAGGAGTTCGGTGTTGGGTACCCTACATGTTGCACACAGCTCCTCATTGGATCAAGTGGATCAGAGAATTCTGGAGGCCAAGAATGCACTAGCAGAGGTGACTGCTTGTCTTCGGGAGCGTCTGCATCGGTGGCAGCAGATTGAGAGCTTGTGTGGTTTTCCTTTAATGAGAAATGCGGGCCTATCCAGTCTCACCGCTACACTCTACCCAGACCCCAACTGGATGCTAATGCCCCGGGCTGCCATGCAGTCCTATCAAGTGCCTGTTTCAGTCGAGGATATGGAGGAAGAAATGCCGCAGATCATACCACAGATTCCTGTCACAGTTTCACCTCTGAAATGTTCTCCACGGTCTCTGGTTCGCTCTCGCCGATCTGGGCATATTGTGCCATCACCTGTCATCATATCGCCTGACCCAGACCTCCTGATTCCCATACGAACTCCATCACGCCGATATGGAGACGAGGAAGAAGAGCATATGAAATTCTCCACTCTTGTGAAACAGGAGTCCTTGGAAACATCCTCAGAGTCCACAGAGTCTATTGGGTCATCCATTAGCAGAAAGTACAGCAGCCTTGATGTCCCTCCTCGGAGAAAATACATTTTCTCTGATAAAATGCCCCGAAAGATCTCTCTGGATGAACAAGAGGACAGTCCCTCACGCAAGATCTCACAGGACGAGATGGACGAGTCTTTGATGGTGAACACCTCAAGGAAAGTATCGCGAGAGGAACTGGACAGCAATACTCCGTCAAGAAAGACATCTAGAGAGGAATTAGAGGCCTCCATGGACCCTCCTAAACAACTGGTTCGAGGAGAATCTGAAACTAGCATTGATTCATGGAAATTACCCAGGGATCTGCCTTTGGATTCCACAATGAGGTACTATTCTACAGAAAAGATGTCCCCAGCAGCGATCGGCATGGACAGTCAGAGACAACGATCTCTCAGAGACAGAAAAGATCATATGGACAGCATTTCTAGAGTTATACCAAAATCAGAGCTGGATTTAGATGCCACAAGTGGAACTAGATATTCAGATGCCTTAATGAACACTTCCATTAAGCACAAAGAAAACCTGGACTTTCCACCCAACATCCAACGAGGAAGAATATTTAGTGAAAACTCCTTTGATGCCACCTTTGATAGTTCAGTAGAAAGCTCAAAAAATTTCAAGATGTTAGGCAAAACTGATTTTTCCAAAGACATCCCTTCACGAATTATGTCCCAAGATGAGTATGATGTGTTCACAGATTTCGAAAGACTAAAAAAAAGAGATGCCATGGATACTGCTTCAAGGAACATAATAAGAGATGAGTTTGAGAGAAGCAAGTCCTTTAAAGAGAACAGGGATATCCGCATGGAAATTCCCTCAAAAAAACCCTCTCGAGATGAGCAAGAGTTTGCAATGGATACACAACGGATACAATGTAAGATAGACAGCTCTGCGGAAACTCCCTTTGGTAAAATACAGAGAGAGGCTGTGGGTCTATCTGTGGAAGCTCCAAGGCGCAAGATATCGCAGGAGGAATTTGTGGTTACTAACCCAGGACAGTTTGGTCCACCTGACCTCACCACGAACTCCTCGATGCTCTGGAAACCATCCTCAGATTCGCTCAGCACGCTAGTGTACGACGGCATTCTTGAAAAGTCCTGCGAGAAACCTCTCGCGGCTAGTTCTTGCGATCTCAGTCACGCGACTTTGGTGTCTAGCTCTTCCCAAAGCCTTCTTGGAATTGAAGGTCAACCAGCAAATTCATCTTCTTCAGAATCTGGGGGTAAAGACAAGAGCAAGATGTCTTCTAAGCTCAAGAATTTGTTCAAGAAGAAAAAGGATAAGGAGAAAGATAAAGACTTGTGAAGCTCAACAAGTAGAA

Function

symbol description
stim2a Predicted to enable calcium channel regulator activity and metal ion binding activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; head; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human STIM2 (stromal interaction molecule 2).

GO: NA

KEGG:

id description
K18196 STIM2; stromal interaction molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_04035454_04049805.mRNA True 4246 mRNA 0.43 12 4034317 4049821

Neighbor

gene id symbol gene type direction distance location
CI01000300_04021130_04027987 RBPJ.S, RBPJ, RBPJA coding upstream 4708 4019875 ~ 4029609 (+)
CI01000300_04008515_04015444 SLC34A2A coding upstream 18761 4006977 ~ 4015556 (+)
CI01000300_03994394_03997804 CHIC2 coding upstream 35554 3994394 ~ 3998763 (+)
CI01000300_03981015_03991839 NA coding upstream 42307 3981015 ~ 3992010 (+)
CI01000300_03972562_03976190 NA coding upstream 58092 3972562 ~ 3976225 (+)
CI01000300_04054526_04057476 NA coding downstream 3677 4053498 ~ 4057513 (+)
CI01000300_04100876_04103178 NA coding downstream 51055 4100876 ~ 4104415 (+)
CI01000300_04105718_04107800 NA coding downstream 55897 4105718 ~ 4107849 (+)
CI01000300_04211928_04219961 NA coding downstream 161348 4211169 ~ 4220143 (+)
CI01000300_04391216_04429569 PCDH7A coding downstream 340937 4390758 ~ 4430154 (+)
G410366 NA non-coding upstream 14576 4019536 ~ 4019741 (+)
G410359 NA non-coding upstream 55048 3979044 ~ 3979269 (+)
G410354 NA non-coding upstream 80903 3953176 ~ 3953414 (+)
G410353 NA non-coding upstream 81272 3952830 ~ 3953045 (+)
G410323 NA non-coding upstream 94635 3939037 ~ 3939682 (+)
G410383 NA non-coding downstream 626 4050447 ~ 4053321 (+)
G410368 NA non-coding downstream 33197 4083018 ~ 4085182 (+)
G410375 NA non-coding downstream 77355 4127176 ~ 4129355 (+)
G410649 NA non-coding downstream 220494 4270315 ~ 4270720 (+)
G410659 NA non-coding downstream 257749 4307570 ~ 4307813 (+)
CI01000300_03901275_03902800 NA other upstream 132166 3901148 ~ 3902892 (+)
G409984 NA other upstream 761919 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 1720423 2312515 ~ 2321088 (+)
CI01000300_01753916_01754815 NA other upstream 2275281 1753916 ~ 1754980 (+)
G408910 NA other upstream 2399348 1633030 ~ 1634969 (+)
G410382 NA other downstream 73877 4123698 ~ 4124416 (+)
G410388 NA other downstream 145825 4195646 ~ 4196555 (+)
CI01000300_05891147_05892754 HELT other downstream 1841246 5891021 ~ 5892824 (+)
G411777 NA other downstream 2419424 6469245 ~ 6469705 (+)
G413459 NA other downstream 4894662 8857687 ~ 8948603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000189 stim2a coding NC_007112.7 CM002885.2 14466860 ~ 14488074 (+)