CI01000300_04443587_04462530 (HGSNAT)


Basic Information

Item Value
gene id CI01000300_04443587_04462530
gene name HGSNAT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 4443587 ~ 4462719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_04443587_04462530.mRNA
ATGAAAAAGGGGAACATCTTTACCTCAAGAAAGGATCGAAAGGAGGAGGCAGTGAGATCTGGTGTTATGGCATCTGAAAGGGGATACAGATGGACTGTCTGTGCTGTGATTGTGCTTTTGATAGCTCTATGCGCAGCCCATATGACAGATCGACCTGCCTTTTCTCACCCTCACCGCAAGACTTCTGTGCTGAAGATGGATGAGGCAGCTCTTTCGGTTGTCAATGAGATCGAGAATGAAATGATGTTATATGTGCTTTCTGATCACTGTTATCAGTGTTTGCCCCAGCCGTTGGGAATAGTACCTGCAAGGCCAGTTTCTGGGACCCCCACTACAGTAGGGTTTGTTGTAAGCACACAACACGCTTTGACACTGCTGCTCAACAGCACCTCTGCAAACCTGGAACAATGCAATGTTCACTTCCACTTTGGGGAGCAGGGGAACTATTCTCTGTGGGTGAAGAACCTGAATGAGCCGTCACGGGTCAGCTGCACTATGATTACTGATTCAGAGCCCATCAACAGCTACCTGCGGCTCACAGTGGCTGATCTCGTGTTTCCTTGGTTTGTGTTCATTATGGGTACTTCTATTGGTTTGTCCCTGAGCGGTTCATTGCGGAGAGGTGTCAAACGCACTCATCTGCTGTGGAAGATTTTCTGGAGGAGCTTACAACTCTTTCTTATTGGAGTCATCATCATCAATCCTAACTACTGCCAAGGACCCTTATCTTGGGATTCCTTGCGTATTCCTGGCGTATTACAGCGTCTAGGCTTCACGTATCTTGTTGTTGCTGTCTTGGATCTTTTGGTGGCCAAGGGCGGACCAACCAACCGTGGTTATTTGGGTCCAGGGGGCATTGGTGACTTTGGTCAGTACCAAAACTGCACCGGTGGAGCTGCAGGTTACATTGATCGCTGGTTGCTCGGAGACCATATTTACCAGACACCTTCATCACGGGTTATATATCAGTCTGTGATGCCCTTTGACCCTGAGGGTGTTTTGGGAAGCATCAACTCCATATTGATGGCTTTTTTGGGTCTTCAGGCAGGGAAAATTCAGCTGCATTACAGGGATCAACACAGGCAAATAATCACACGATTTCTCATTTGGGGATTCATACTGGGGATTATCTCAGCTGTATTGACCAAGTGCTCCAGAAATGAAGGCTTCATCCCTGTCAACAAAAACTTGTGGTCTTTGTCCTATGTGACGACTCTCAGCTGTTTTGCTTTTGTGGCTCTGGGTTTTTTTTACTACATGGTGGATGTAAAGAAGTGGTGGTCTGGAGCTCCTTTCTTCTACCCTGGTATGAATTCCATCTTGGTGTATGTGGGTCATGAAGTGTTTGAAGAATACTTCCCTTTTCGTTGGAAGATGGCCAATAACCAATCACACGCAGAGCATCTAGCACAGAACCTCCTGGCCACCTCCATATGGGTGTTCATAGCCTACCTGCTCTACAGGAAGAAGATCTTCTGGAAGATTTAAAAGTGTTTCTGTCCTGCAGATTTTAGGACCTGCTTATCATTGTGAAGGAGATTTTTTTTTTTTTTTTGGGGGGGGGATATTTTTAGATATAGAAAATCAGCAGATCTCTGAACATCTGTGGGGAGACAAAAACTCACACGTGATCCAGGAATAGATCTTGGCTATTATTTGAGAAGAGCAGAAGGAAGA

Function

symbol description
hgsnat Predicted to enable heparan-alpha-glucosaminide N-acetyltransferase activity. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component

KEGG:

id description
K10532 HGSNAT; heparan-alpha-glucosaminide N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_04443587_04462530.mRNA True 1677 mRNA 0.46 13 4443587 4462719

Neighbor

gene id symbol gene type direction distance location
CI01000300_04439356_04442462 NA coding upstream 897 4439218 ~ 4442690 (+)
CI01000300_04391216_04429569 PCDH7A coding upstream 13433 4390758 ~ 4430154 (+)
CI01000300_04211928_04219961 NA coding upstream 223444 4211169 ~ 4220143 (+)
CI01000300_04105718_04107800 NA coding upstream 335738 4105718 ~ 4107849 (+)
CI01000300_04100876_04103178 NA coding upstream 339172 4100876 ~ 4104415 (+)
CI01000300_04465330_04479739 PI4K2B coding downstream 2379 4465098 ~ 4481238 (+)
CI01000300_05022837_05027540 NA coding downstream 560118 5022837 ~ 5028915 (+)
CI01000300_05031151_05064873 TUSC3 coding downstream 568229 5030948 ~ 5065564 (+)
CI01000300_05176333_05206119 MICU3 coding downstream 713614 5176333 ~ 5207604 (+)
CI01000300_05217150_05224947 VPS37A coding downstream 753369 5216088 ~ 5225301 (+)
G410710 NA non-coding upstream 35619 4404801 ~ 4407968 (+)
G410659 NA non-coding upstream 135774 4307570 ~ 4307813 (+)
G410649 NA non-coding upstream 172867 4270315 ~ 4270720 (+)
G410375 NA non-coding upstream 314232 4127176 ~ 4129355 (+)
G410368 NA non-coding upstream 358405 4083018 ~ 4085182 (+)
G410733 NA non-coding downstream 66313 4529032 ~ 4560250 (+)
G410776 NA non-coding downstream 194051 4656770 ~ 4658791 (+)
G410778 NA non-coding downstream 214829 4677548 ~ 4679504 (+)
G410820 NA non-coding downstream 336565 4799284 ~ 4799529 (+)
G410965 NA non-coding downstream 597176 5059895 ~ 5071843 (+)
G410388 NA other upstream 247032 4195646 ~ 4196555 (+)
G410382 NA other upstream 319171 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 541436 3901148 ~ 3902892 (+)
G409984 NA other upstream 1171189 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 2129693 2312515 ~ 2321088 (+)
CI01000300_05891147_05892754 HELT other downstream 1428348 5891021 ~ 5892824 (+)
G411777 NA other downstream 2006526 6469245 ~ 6469705 (+)
G413459 NA other downstream 4481764 8857687 ~ 8948603 (+)
G414249 NA other downstream 5907192 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 6137217 10604458 ~ 10605033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000207 hgsnat coding NC_007112.7 CM002885.2 15226268 ~ 15257315 (+)