CI01000300_05747200_05752154 (FAT1, FAT1A)


Basic Information

Item Value
gene id CI01000300_05747200_05752154
gene name FAT1, FAT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5746797 ~ 5752159 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_05747200_05752154.mRNA
TTATATATACACAAAAGGCGCTTCAATGCTCACAACAATTCATCATTTGGCGTATCTGCTGTCACGGTGTCGATTGTGAAGTTAGAAATATAGACAAATAGTCAGTGCCTGCGTCTAAGGATGCTGATGCACTAATCATATTTGTTTTGAGTGATGTGCCATAAACAGATATTTAAAAGTTGTCTGTCAGTTTCTTTTGTGCTGTGTGTAAACTGTATCTTCTGCAACCCATATAACTTCTTAATGATAATTTACGAGGTGTTTAGAGTTGAAATTTACAGATGAAAGACCAAACCATGTGAATGTGCCCGAAATATACTAAATCGATTAAAAGTGGAACTGTATGATCGATTAACTTTTTCTTTTTATTCTCTACAGTTTCAGTGAGGAGTGCGCTGCAAACATGCAGAACCACGTGACTTTACTGCTGGTGGTTCTGCTGCTCCTGTGCGGCTGCACTGGTAACCAAAGCCTCAACACTGCGCCCATCCCTCTGTTTACCGAGTCTGTTTACAATGCTACCATTTATGAGAACTCTGCTGCTAAGACCTATGTGGAAAGTCCTGTCAAAATGGGAATCTACATCACAGACCCTACCTGGGAAATACGGTACAAAATCGTGTCAGGAGACAACGAGAACCTGTTCAAAGCTGAGGACTATCAATTGGGAGACTTTAGTTTTTTGCGAATAAGGACCAAAGGAGGTAGCAGTGCCATTCTTAACCGGGAGGTTAGAGACCACTATATTCTCACAGTCAAAGCCATGGAAAAGAATTCAAATGCTGAGGCTCGAACACGAGTCAGGATTCAGGTACTGGACACAAATGACCTTCGGCCACTGTTCTCCCCTACTGCTTATAGCATATCTTTACCGGAAAACACAGCTGTTCGCACAAGCGTAGCCAAGGTGATGGCGACAGATGCAGATATTGGTACAAACGGAGAGTACTACTACAGTTTCAGAGAATGGACAGACATGTTTTCGGTCCATCCCACGAGTGGTGTAGTTACACTAACCGGAAAGCTGGACTACGCTGAGACAAAGCATTATGAATTAGAGATTTTAGCAGTGGACAGAGGTATGAAGCTGTATGGTAGCAGTGGATTTAGCAGCATGGCTAAGTTAACGGTACGAGTGGAGCAGGCCAATGAGCATGCACCGATCATCACTGCTGTAACCCTAGCACCCTCAGACACCGACAAGGATCCTACTTATGCTGTCGTGACTGTCGAAGACAATGACCAAGGTGCTAATGGTGAGATAGCATCTCTCAGTGTGGTTGCGGGCGACCCTCTTCAGCAGTTTAAAGCCATGCGGACAAGTCCAGGCAGTAAGGAATATAAAATCAAAGCAGTTAAGCAGGTTGACTGGGATAGTCAGCCCTTTGGATACAACCTAACACTGCAAGCCAAAGACAAAGGAAGTCCACCCCAGTTTTCATCTGCAAAGGTCATCCATGTCATGTCTCCCCACTATAAAGTAGGGCCTCCTAAATTCAGTCAAGCTATTTACAGAGTCAATGTGAGTGAATTTGCACCATTGCACACACCTGTTGTAATGGTAACAGCTGTGCCAAAGTATCCTCAACTTAAGTATGCATTTAGACACAAATTGGATAAAAATCATTTTGCCATAAATGCAGATACAGGCTTGATCACTACAGCTGGGCCCCTTCACGCAGACTCCTTGAACAAGTATGAATTAGAAGTTGTGACCAGCGAGAAAAAGGCAGTCACAAAAGTCATTATTGATGTCATCGACGTGAACAACAATGCCCCAGAATTCAAACAGACATCTTACAAAGCTAGTGTTGATGAAAACATGCCCATAGGTACTAGTGTGCTAACAGTGAAAGCCACTGATTTAGACAGTGGGGAGAATGGATATGTCACTTACAGCATTGCCAATGTGAATCCCCAGCCGTTTGTCATTGACTACTTCTCTGGTGTCATCAGCAGTTCAGAGATTTTAGATTATGAACTGATGCCAAGGATTTATACCTTGAAAGTGCGGGCATCAGACTGGGGTTCCCCTTTTCGACGTGAGGTGGAAACCCAGGTTACAGTCACTCTTAACAACTTAAATGACAACAAGCCACTTTTTGAGAGTGTGGATTGTGACATAACTGTGCCGAGAGACCATGGTGTTGGTGAGCAGATCACAACGGTGTCTGCTATTGATGCTGATGAGTTGCAGTTGGTGAGGTACAGAATAAAAGCTGGGAATGACTTAAATTATTTTGATATGAATCCAAACTCTGGCGTACTGTCTTTGAAGCAACCTTTAAATGAGGGCGAGGCAGCAAAAGTGTCCTATCACAGCTTGCAGATCATAGCCAGTGATGGAGAACATGAAACTCAGCCCATGTTTTTGAACATTACGGTTGTTACGGCACGTAAACCGGTCCAAGTGAAATGTGTTGATACTGGAGTTGCCAGCATGCTGGCTGAAAAGCTCCTGCAAGGAAGCAAGATCCATAGCCAGAGTGAACCCGAAGACCATTTCCAAGACTTTCACTCTGTGAACCGCATTGTGCCCCAGTTTGCTGAGACTTTTCCCAGTGTGATTGAGGTCAAAGAAGACTTGCCTGTTGGGGCCAGGATTGTTCATCTTAGTGCCTCGGATTCTGACAGCGGTTTTAATGGAAAGCTGGTTTACGTTATCTCTGGGGGTGACGCTGAGAGTCGTTTCGTCATTGACATGGACAGTGGATGGCTCAAAGTGTATGCTCCTCTTGATAGAGAAACAACTGATCACTATACGTTGAACATTACCGTGTATGACCTTGGAATTCCCCAGAAGTCATCTTCACGTCTGCTGGATGTTAAGATCCTGGATGCTAATGACAACAGCCCACAGTTTTTACAGGACACATACTCAGTGGAAATCAGCGAGAGCACTGCGGTCGGCACAGAGATCATTCAAGTTGAAGCAAAAGATAAAGATCTTGGGGATAATGGCGTGGTCAGATACTCCATATTGGCAGATACAGATCAATTTGCTATTGATACAGAAACAGGGATCGTTACGGTGAAGAAGCCTCTAGACCGAGAGGTGCAACCCAGTTTTGTACTCAAGATAGCAGCTCGTGACCAGGCTGCTGCTGAACCTCAACTTGTCTCAACTGTGTTGCTTAAAATCACACTGGAGGATGTAAATGACAACCCTCCAAAATTTATTCCCCCAAATTATCAGGTGAGAGTACGTGAGGATCTACCCATCGGTACTGTTATAATGTGGCTGGAGGCTCATGACCCTGATGTTGGGCCATCTAGCCAGGTTCGATACAGCCTCATTGACAATGGGGACGGGAAGTTTGAAGTAGACAAATTGAGTGGTGCCGTACGAATCGTACAGAATCTGGATTACGAGAAAAAGCAAGTGTACAGTCTCACAGCAAGGGCAAAGGACAAAGGCAAGCCGATATCTTTGTCCTCGAGTTGTCACATAGAGGTAGAGGTTGTGGATGTGAACGAGAATCTGTACAGGCCATTGTTCCCATCATTTGTGGATAAGGGATTTATCAAAGAGGATGTGCCCATTGGAACATCAGTGATGAAAATCACAGCTCAGGATGAGGATAAAGGAAGAGACGGAGAAATCCGTTACTCCATTCGGGATGGGTCGGGTCTGGGGATCTTTACTATTGACGAAGAAACTGGATGTGCTGGCATAGGGTTGCCCCCCCCTACTCCCCAACAAGACCATCTGTTGCCCATTGTGCCTGCCCAGTCTTATGGAGATTGGGCTTTGCTGCAGTTCCAAAGGATGGATGCTTATTTGAAGGTTTTTCCAAATTCATTTGGATAGAGAAA

Function

symbol description
fat1a Predicted to enable calcium ion binding activity. Acts upstream of or within closure of optic fissure and pronephros development. Predicted to be located in membrane. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pleuroperitoneal region; and tail bud. Orthologous to human FAT1 (FAT atypical cadherin 1).
fat1 Predicted to enable calcium ion binding activity. Predicted to be involved in several processes, including actin filament organization; camera-type eye morphogenesis; and establishment or maintenance of epithelial cell apical/basal polarity. Located in several cellular components, including cell-cell junction; nucleus; and perinuclear region of cytoplasm.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16506 FAT1_2_3; protocadherin Fat 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_05747200_05752154.mRNA True 3816 mRNA 0.45 2 5746797 5752159

Neighbor

gene id symbol gene type direction distance location
CI01000300_05306807_05337120 PCM1 coding upstream 409591 5306807 ~ 5337206 (+)
CI01000300_05259191_05302329 MTUS1 coding upstream 444098 5258606 ~ 5303111 (+)
CI01000300_05217150_05224947 VPS37A coding upstream 521496 5216088 ~ 5225301 (+)
CI01000300_05176333_05206119 MICU3 coding upstream 539193 5176333 ~ 5207604 (+)
CI01000300_05031151_05064873 TUSC3 coding upstream 681233 5030948 ~ 5065564 (+)
CI01000300_05768567_05786736 FAT1, FAT1A coding downstream 16238 5768397 ~ 5786830 (+)
CI01000300_05791658_05831583 FAT1, FAT1A coding downstream 38857 5791016 ~ 5832224 (+)
CI01000300_05841871_05849693 CASP3, CASP3A coding downstream 89451 5841610 ~ 5850618 (+)
CI01000300_05891147_05892754 HELT coding downstream 138862 5891021 ~ 5892824 (+)
CI01000300_05936720_05938628 SLC25A4, SLC25A5, SLC25A4.L coding downstream 183837 5935996 ~ 5939057 (+)
G411437 NA non-coding upstream 37891 5708431 ~ 5708906 (+)
G411451 NA non-coding upstream 42881 5703649 ~ 5703916 (+)
G411422 NA non-coding upstream 65813 5680753 ~ 5680984 (+)
G411421 NA non-coding upstream 69330 5677220 ~ 5677467 (+)
G411361 NA non-coding upstream 190887 5550978 ~ 5555910 (+)
G411464 NA non-coding downstream 82698 5834857 ~ 5835068 (+)
G411470 NA non-coding downstream 85922 5838081 ~ 5838305 (+)
G411474 NA non-coding downstream 112716 5864875 ~ 5865645 (+)
G411503 NA non-coding downstream 149877 5902036 ~ 5902396 (+)
G411505 NA non-coding downstream 153084 5905243 ~ 5905453 (+)
G410388 NA other upstream 1550242 4195646 ~ 4196555 (+)
G410382 NA other upstream 1622381 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 1844646 3901148 ~ 3902892 (+)
G409984 NA other upstream 2474399 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 3432903 2312515 ~ 2321088 (+)
G411777 NA other downstream 717086 6469245 ~ 6469705 (+)
G413459 NA other downstream 3192324 8857687 ~ 8948603 (+)
G414249 NA other downstream 4617752 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 4847777 10604458 ~ 10605033 (+)

Expression


Co-expression Network