CI01000300_05891147_05892754 (HELT)


Basic Information

Item Value
gene id CI01000300_05891147_05892754
gene name HELT
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5891021 ~ 5892824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_05891147_05892754.mRNA
CTTTATAAGCGGCTGCCTCCAGTCAGCTCATCTCAGTCTGAAGCGTCTGGAAAGAAGAGCGTGTACATAGTCTAGCTACAATATTTTCACAATTTCACTATCATTTTTACTAGTTTTTACCAAATGATGGCGTCAAAGATGAAGGATCGCAAGAAAACTCCTGTTTCTCACAAGGTCATTGAAAAAAGAAGAAGAGACCGAATCAACAGATGTCTTAACGAGCTGGGAAAGACAGTTCCCATGGCATTGGCTAAACAGAACTCTGGGAAACTCGAGAAAGCAGAAATCCTGGAAATGACGGTGCAGTATCTGCGCGCGCTCCACTCCGCAGACTTCCCGCGCGGGAGAGAGAAAGGAGAACTGCTGACAGAGTTTGCGAATTACTTTCACTACGGCTATCACGAGTGCATGAAGAACCTCGTTCACTACCTGACCACCGTGGAGCGAATGGAGACCAAAGACACCAAGTACGCACGGATTCTCGCGTTCCTGCAGTCCAAAGTCGTTACCGAGCCAGTGTTTGGCTCGTTAGGTACCATCTCACCAGACCCTACGGACCTTCTGTGCCAGCTGGAGTACCAGAGTCCAAGTCCAACCGACTCAGTGTTTCAGCAGAGCCCACCCGGACACTTTTCCTGGCACAGCTCGACGCGGAGCCCCACGCTCGCGTATCCAGCGATGTCTCAGCACAGTGGATACTTATCACCGGTTCAGGGACTTGATCATCATTACATGAACTTCATCGGGCACTCACACCCCAATGCCTTCAGCTTACACAATGCACAACACGCTGCTCTGTAAATACGTCTGCATATGTCCTTAATTTATATATGTGTACATGTTTTATTTTAATATGTAGATATATCGTGAA
>TU472695
CTGGAAAGAAGAGCGTGTACATAGTCTAGCTACAATATTTTCACAATTTCACTATCATTTTTACTAGTTTTTACCAAATGATGGCGTCAAAGATGAAGGATCGCAAGAAAACTCCTGTTTCTCACAAGGTCATTGAAAAAAGAAGAAGAGACCGAATCAACAGATGTCTTAACGAGCTGGGAAAGACAGTTCCCATGGCATTGGCTAAACAGAACTCTGGGAAACTCGAGAAAGCAGAAATCCTGGAAATGACGGTGCAGTATCTGCGCGCGCTCCACTCCGCAGACTTCCCGCGCGGGAGAGAGAAAGGAGAACTGCTGACAGAGTTTGCGAATTACTTTCACTACGGCTATCACGAGTGCATGAAGAACCTCGTTCACTACCTGACCACCGTGGAGCGAATGGAGACCAAAGACACCAAGTACG

Function

symbol description
helt Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human HELT (helt bHLH transcription factor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_05891147_05892754.mRNA False 871 mRNA 0.48 4 5891021 5892824
TU472695 True 426 TUCP 0.46 4 5891067 5892425

Neighbor

gene id symbol gene type direction distance location
CI01000300_05841871_05849693 CASP3, CASP3A coding upstream 40403 5841610 ~ 5850618 (+)
CI01000300_05791658_05831583 FAT1, FAT1A coding upstream 58797 5791016 ~ 5832224 (+)
CI01000300_05768567_05786736 FAT1, FAT1A coding upstream 104191 5768397 ~ 5786830 (+)
CI01000300_05747200_05752154 FAT1, FAT1A coding upstream 138862 5746797 ~ 5752159 (+)
CI01000300_05306807_05337120 PCM1 coding upstream 553815 5306807 ~ 5337206 (+)
CI01000300_05936720_05938628 SLC25A4, SLC25A5, SLC25A4.L coding downstream 43172 5935996 ~ 5939057 (+)
CI01000300_05952579_05954888 ANKRD37 coding downstream 59755 5952579 ~ 5954892 (+)
CI01000300_06064983_06069084 TLR3 coding downstream 171929 6064753 ~ 6069593 (+)
CI01000300_06074165_06081192 CYP4V8 coding downstream 179174 6071998 ~ 6081934 (+)
CI01000300_06421690_06424597 NA coding downstream 528866 6421690 ~ 6424603 (+)
G411474 NA non-coding upstream 25376 5864875 ~ 5865645 (+)
G411470 NA non-coding upstream 52716 5838081 ~ 5838305 (+)
G411464 NA non-coding upstream 55953 5834857 ~ 5835068 (+)
G411437 NA non-coding upstream 182115 5708431 ~ 5708906 (+)
G411451 NA non-coding upstream 187105 5703649 ~ 5703916 (+)
G411503 NA non-coding downstream 9212 5902036 ~ 5902396 (+)
G411505 NA non-coding downstream 12419 5905243 ~ 5905453 (+)
G411511 NA non-coding downstream 40698 5933522 ~ 5933922 (+)
G411512 NA non-coding downstream 41109 5933933 ~ 5934718 (+)
G411513 NA non-coding downstream 42070 5934894 ~ 5935121 (+)
G410388 NA other upstream 1694466 4195646 ~ 4196555 (+)
G410382 NA other upstream 1766605 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 1988870 3901148 ~ 3902892 (+)
G409984 NA other upstream 2618623 3271685 ~ 3272398 (+)
CI01000300_02313596_02320912 NA other upstream 3577127 2312515 ~ 2321088 (+)
G411777 NA other downstream 576421 6469245 ~ 6469705 (+)
G413459 NA other downstream 3051659 8857687 ~ 8948603 (+)
G414249 NA other downstream 4477087 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 4707112 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 4753367 10661680 ~ 10674265 (+)

Expression


Co-expression Network