CI01000300_08319762_08322122 (DNAH6)


Basic Information

Item Value
gene id CI01000300_08319762_08322122
gene name DNAH6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8319762 ~ 8322294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_08319762_08322122.mRNA
GTGCACTGCAGAATCATGCACGTAAATACAACCTGCCCATTGATGAGCTAAATTTTCGTTTCAACATGGTACCAGTGTACAGAGACCAGACCCTTGTCACTGAAGCTCTGAAAAGCCTTGAGCCAGGGAAGGAACTTGACATGGACAAGGAGCTTCCCACCATGGAAGATGGTGTGTTGGTTCATGGGATGTTCATGGATGCTTGTCGCTGGGATGACATGAACATGGTTATTGAAGATGCGCTGTCAAGGGTGATGAACCCCATGTTGCCTGTGGTGCATTTTGAACCTCAGCAAAACTATGTTCCTGAGCCCACTCTCTACCACGCACCACTGTACAAGACCTCCGCTCGTGCTGGAACTCTGTCTACTACAGGCCACTCTACAAATTTTGTGGTAACTGTGATGTTGCCATCCAATCGGCTCAGTGACTACTGGATCTCAAAAGCCTCTGCACTACTCTGCCAACTCAATGAATAAGCAAAGCTTTACTTCTTGACTTTAGATCCTTTCTCAAGACAGCTTTTAGTGTTTTTGAGCATAAGTAACATTAAAGAATTAAAAAAAAAAAAAAACATTAAGCATTAAGAATGAATTATAAATCAAAATGAACTGTAATGTTGCTTTTTTCCTAAATGCAGCTCTAAAATGA

Function

symbol description
dnah6 Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Acts upstream of or within determination of heart left/right asymmetry and epithelial cilium movement involved in determination of left/right asymmetry. Predicted to be located in cilium; cytoplasm; and microtubule. Predicted to be part of dynein complex. Is expressed in Kupffer's vesicle and testis. Orthologous to human DNAH6 (dynein axonemal heavy chain 6).

GO: NA

KEGG:

id description
K10408 DNAH; dynein heavy chain, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_08319762_08322122.mRNA True 651 mRNA 0.42 3 8319762 8322294

Neighbor

gene id symbol gene type direction distance location
CI01000300_08252260_08318173 DNAH6 coding upstream 1148 8252260 ~ 8318614 (+)
CI01000300_08229980_08248846 KDM4C coding upstream 70916 8229980 ~ 8248846 (+)
CI01000300_08091709_08137762 PAX5 coding upstream 181014 8091583 ~ 8138748 (+)
CI01000300_07989533_07994134 PRIMPOL coding upstream 325326 7989533 ~ 7994436 (+)
CI01000300_07843046_07844594 MED28 coding upstream 474773 7842381 ~ 7844989 (+)
CI01000300_08567722_08574695 ANXA5B coding downstream 245428 8567722 ~ 8575613 (+)
CI01000300_08599231_08604382 ZMYND10 coding downstream 276937 8599231 ~ 8604927 (+)
CI01000300_08713685_08718935 GTF2E2 coding downstream 391391 8713685 ~ 8719736 (+)
CI01000300_08874463_08915149 NA coding downstream 552169 8874463 ~ 8915221 (+)
CI01000300_08917691_08926730 NA coding downstream 595397 8917691 ~ 8927877 (+)
G413182 NA non-coding upstream 13417 8305945 ~ 8306345 (+)
G412186 NA non-coding upstream 86370 8220324 ~ 8233392 (+)
G412284 NA non-coding upstream 149018 8163356 ~ 8170744 (+)
G412283 NA non-coding upstream 166587 8152932 ~ 8153175 (+)
G412211 NA non-coding upstream 178896 8140533 ~ 8140866 (+)
G413281 NA non-coding downstream 70874 8393168 ~ 8393956 (+)
G413280 NA non-coding downstream 74388 8396682 ~ 8411423 (+)
G413290 NA non-coding downstream 103670 8425964 ~ 8426219 (+)
G413304 NA non-coding downstream 128205 8450499 ~ 8450810 (+)
G413347 NA non-coding downstream 236300 8558594 ~ 8560835 (+)
G411777 NA other upstream 1850057 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 2427337 5891021 ~ 5892824 (+)
G410388 NA other upstream 4123207 4195646 ~ 4196555 (+)
G410382 NA other upstream 4195346 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 4417611 3901148 ~ 3902892 (+)
G413459 NA other downstream 622189 8857687 ~ 8948603 (+)
G414249 NA other downstream 2047617 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 2277642 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 2323897 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 3381190 11704476 ~ 11708351 (+)

Expression


Co-expression Network