CI01000300_10854388_10857566


Basic Information

Item Value
gene id CI01000300_10854388_10857566
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10854388 ~ 10857574 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_10854388_10857566.mRNA
CATATCAAATTACCATTGAGTAAATTCCAGCATCTTTATTACACCAGGTACATCACCGCAGGATTAAAAAAGTTAGAAAGTTGTTTCAAAGAACTAGAGAATCATTTTGGAGCAGGCACAACAAACGAACTAGTTCCCACCGGGTTGCAGAGCCACAGTTTGGTTGGGGGTATGCATGGCTCCCGTGTTTTCCATGACAGCATATCAGTGTCTCGTTTAGTCTCCCCATGCCCACACCTTGTTGTTACTATTGGGCCTGTCTCAGTACCCTGCTTGATAGATACTGGTTCCATGGTATCGACCATTACAGAGAGCTGTTTTAGGTCAGGGTTCGAACCATGGGACCAGAAACGTTTGCAGTCATGCCACTGGTTGCAGCTCAAAGCAGCCAATGGATTGGCAATCCCTTACATTGGGTACACAGAATTAGACATCGAACTGTGTGGTTGCGTGGTATTAGAGTGTGGAATACTGGTGGTTCCTCCAGTGCGCATGAGTGGTGGCATAGTTTTGGTACCCATCGTTAATGTCAGTGTTCTCGATGCAGTTTTATATCCCACAATGATCCTTGGGAAGCTAAGGGTTTTTTTTTTGGATTCACCTGTTGGGCTGACCGAGGTTTCGATGCTGAATGCTTGGTTAGCAGCCTGCGATAGAATTGTTGCGTCAGGGGCAGAGCGCGTAGAAAATGTAGAACTGCAAGGGTTGTCGGACGAGGAGCAGGAACAGGTAAGGGCTCTCCTTCGGGAATTCCAGAGTGTGTTTTCCTCTGGAGACACTGAATTCTTTAACAGGCTTGCTGGTTTACCACATCTGGCCAGTGGGTACAATCAAGTCCATGTTACTGAATCTGATCATCATAAAATGACTTTTTGTACACCCTTCGGGCTATACAAATGGAACTGTATGCCCTTGGGCCTGTGCAACACACCAGGCACCTTCCAATGCTTGATGAAGCAACTCTTTGGTGACCAGCAACACCAGTCTGTCTTGTTGTATCTTGACGACAATATTGTGTATTCCTCATCCGTGCAACACCATCTGCAGAGGCTGAGGATGATGCTGGGTTGCCTACGAGCCACTGGCCTCAAGGTTAAGTTTTTTGCATTTTTTAGGGTAGAGGTGCGGTACTTGGGACGCGTAATATCGTCCCAGGGGGTAGCTACAGACCCAGGTAAGGTAGAGGCCGTAGCTCAGTGGCCATATCCTAAGACTGTGTCCGAGCTGCGGACCTTTCTCGGTTTTGTTAGCTACTATAGGCAATTTGAAGAAGGGTTTGGCCAGGTAGCAGCGCCGTTACTGACCGAGGCAGGTAGAGGGAAAGTGAGCAGTCGGAGACAGGAATTGGTGGCGTTGTGGTCTGAACAGTGCGAACAAGCATTTCGGACCTTGAAGCAGAAAATTACTACAGTGCCAGTCCTTGCATATGCTGACTTTAAGCTTCCATTTATCTTGGAGATTGATGCCAGCCATGTAGGGCTAGGTGCAGTGCTTTCCCAAGAGGTTGATGGCAAGATAATAACCTGCTCACCTGGCCACTGCAAAATTGGGTGCCACAGAAGGGTCTGTCGTTCTGATGGCAGCGAAGAAGTACTGCAGCTGGTGCTGCCTGCTGTGTTACAGCCTGAGGTACTGACCCAATTACACCAGTGCCATGGGCACCAAGGCACCGAACGCACCCTGGAGTTGGTGCGACAACGGTGCTACTGTCCAGGGATGTCGGCTGATGTAGCCCATTGGGTACAGCAATGTGAACGGTGTCAACAGACAAAAGAGGCTGCACCAGTTGCTCGGAGTTGTAAGGCACACCTACTGGCCTCCCTCCCAAACAAGATAGTGACCCTTGATTTCACAGTCCTGGAGCCCTCCCATGAAAACGTGCTGGTAATGACGTTTTTGATGTTTTGATGTTTTTA

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_10854388_10857566.mRNA True 1916 mRNA 0.49 5 10854388 10857574

Neighbor

gene id symbol gene type direction distance location
CI01000300_10764813_10766212 NA coding upstream 88139 10764133 ~ 10766249 (+)
CI01000300_10688627_10696530 MTAP.L, MTAP coding upstream 157858 10688627 ~ 10696530 (+)
CI01000300_10682604_10685243 TOPORSA, TOPORS coding upstream 169114 10681317 ~ 10685274 (+)
CI01000300_10675299_10675754 NDUFB6 coding upstream 177476 10674589 ~ 10676912 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 coding upstream 182982 10661680 ~ 10674265 (+)
CI01000300_10896258_10905139 NA coding downstream 38684 10896258 ~ 10905260 (+)
CI01000300_10938720_10949086 ARHGEF38 coding downstream 80140 10937714 ~ 10949231 (+)
CI01000300_10955227_10962261 G3BP2 coding downstream 97653 10955227 ~ 10963136 (+)
CI01000300_10969048_10992283 USO1 coding downstream 111474 10969048 ~ 10993226 (+)
CI01000300_11005365_11024863 CORO2A coding downstream 147791 11005365 ~ 11026219 (+)
G414885 NA non-coding upstream 50232 10803901 ~ 10804156 (+)
G414883 NA non-coding upstream 54438 10799716 ~ 10799950 (+)
G414881 NA non-coding upstream 55463 10798705 ~ 10798925 (+)
G414880 NA non-coding upstream 57194 10796978 ~ 10797194 (+)
G414872 NA non-coding upstream 76284 10777866 ~ 10778104 (+)
G414930 NA non-coding downstream 3365 10860939 ~ 10861213 (+)
G414936 NA non-coding downstream 61475 10919049 ~ 10919327 (+)
G414904 NA non-coding downstream 172439 11030013 ~ 11032511 (+)
G414946 NA non-coding downstream 216063 11073637 ~ 11073866 (+)
G414948 NA non-coding downstream 217763 11075337 ~ 11075544 (+)
CI01000300_10604458_10604787 NA other upstream 249626 10604458 ~ 10605033 (+)
G414249 NA other upstream 480490 10369911 ~ 10373898 (+)
G413459 NA other upstream 1905785 8857687 ~ 8948603 (+)
G411777 NA other upstream 4384683 6469245 ~ 6469705 (+)
CI01000300_11704476_11708232 NA other downstream 845910 11704476 ~ 11708351 (+)

Expression


Co-expression Network