CI01000300_11370829_11375624


Basic Information

Item Value
gene id CI01000300_11370829_11375624
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 11370829 ~ 11375773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_11370829_11375624.mRNA
AAGGGAGATCACGGTGACATCTTCTTCAGACATACTCGCATTGTCAAAGACTATAATTTTAACAGCTGACGTGAGGAGAAGTGCTGGAGGAAAAAAGTACGAGGAAAAACACGCAATAATAACAAAAAATAGCTTCATTACACAACACATTTCTCATGTAAAATGTTTTGGCATGTACAGTGAGAGAGAGATGCCGCCACTTATTTCTGAGGAGACAGAGTTGGATGTGAGAGGCGGTGTGGTGTGGAGAGAACAAGATCGAGAGAGGGCACGCGAGTCCACGGCCAGAGCCAGCAGCAGGAGCAGCAGCAGCGGTGCAGGGGGAGGAGGAGGAGAAGGAGAAAGCTCCATGCAGTTCAGCACCAGACCGGCCAGCGCCGAGCCGGGCTTCATGGGGACATGGACACAGCAGAGCACTGACAGCAACCTCCTTTTCAGAATGTCCCAGCAGGACAGAATGTTTATGGGAGGGGGATCGGGGTCTGTGAAGGGAGAGATGGTGCTGAATCTGATCAGATCTCCGGTGAAAGCTCTGAGATGCTGTGGTGCAGGCGAACTTCATCACTCTCTCTGAGGCTTCTCAGCATCCTCTCTACTTGAACCACTTGTTATTTTCCCCGATGTACATTCCATGAATGCCTTTTTTTTTTTTTTATAAATATAAATGTAAAATTATTTTATATTGTAGATGATTTTGCATAAAAACCTTTGAGACATTTTCGA

Function

NR:

description
Si:dkey-114f6.1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_11370829_11375624.mRNA True 723 mRNA 0.46 4 11370829 11375773

Neighbor

gene id symbol gene type direction distance location
CI01000300_11323703_11358998 NA coding upstream 11581 11322453 ~ 11359248 (+)
CI01000300_11303493_11313969 NA coding upstream 56749 11303349 ~ 11314080 (+)
CI01000300_11141716_11143148 NA coding upstream 227234 11140851 ~ 11143595 (+)
CI01000300_11044621_11061213 NA coding upstream 309564 11044568 ~ 11061265 (+)
CI01000300_11036591_11037929 HEMGN coding upstream 332722 11034674 ~ 11038107 (+)
CI01000300_11444117_11455995 BNC2 coding downstream 68344 11444117 ~ 11456338 (+)
CI01000300_11478840_11479838 NA coding downstream 103010 11478783 ~ 11480053 (+)
CI01000300_11500083_11519381 NA coding downstream 123050 11498823 ~ 11520162 (+)
CI01000300_11553769_11566330 NA coding downstream 176976 11552749 ~ 11566666 (+)
CI01000300_11704476_11708232 NA coding downstream 328703 11704476 ~ 11708351 (+)
G415078 NA non-coding upstream 80186 11290408 ~ 11290643 (+)
G415028 NA non-coding upstream 83812 11200215 ~ 11287017 (+)
G414909 NA non-coding upstream 221702 11079100 ~ 11149127 (+)
G414949 NA non-coding upstream 292307 11077919 ~ 11078522 (+)
G414948 NA non-coding upstream 295285 11075337 ~ 11075544 (+)
G415080 NA non-coding downstream 94038 11469811 ~ 11473607 (+)
G415103 NA non-coding downstream 165181 11540954 ~ 11541281 (+)
G415108 NA non-coding downstream 176489 11552262 ~ 11552599 (+)
G415161 NA non-coding downstream 279290 11655063 ~ 11714698 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other upstream 707342 10661680 ~ 10674265 (+)
CI01000300_10604458_10604787 NA other upstream 766067 10604458 ~ 10605033 (+)
G414249 NA other upstream 996931 10369911 ~ 10373898 (+)
G413459 NA other upstream 2422226 8857687 ~ 8948603 (+)
G411777 NA other upstream 4901124 6469245 ~ 6469705 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G8866 bnc2 unknown NC_053112.1 CM020909.1 30672711 ~ 30673063 (+)
tiger barb (Puntius tetrazona) G3571 NA unknown NC_056699.1 CM032068.1 15230539 ~ 15230886 (-)