CI01000300_11444117_11455995 (BNC2)


Basic Information

Item Value
gene id CI01000300_11444117_11455995
gene name BNC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 11444117 ~ 11456338 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_11444117_11455995.mRNA
GCCATTCGCTGTACTCTGGTAAACTGCACATGTGAGTGTTTCCAGCCTGGAAAAATCCACCTGCGGACATGTGACCAGTGCAAGCATGGATGGGTTGCTCATGCTCTAGACAAGCTGAGCACACAGCATCTGTACCACCCAACGCAGGTGGAGATTGTGCAGTCCAATGTGGTGTTTGACATTAGCAGTCTGATGCTGTATGGAACTCAGGCAGTACCTGTGAGGTTGAAGATCCTGCTGGACCGTCTGTTCAGCGTCCTCAAACAGGAAGAGGTTCTGCACATCCTCCATGGCCTGGGCTGGACCCTGAGAGATTATGTTAGAGGCTACATACTACAGCAGAGCGAGGTGGATGGCTTTGGTTTGGAGACCATGCCTAAGTGGAACAGCATGCTGAGCTTGAAGGCGGTTTTGAGGCCTTGTACGAGGAAATGGCTTCTCATCTATTCTTCTTTACAAAATGCAGTCTTGACTGCTGATAACTATGAACTCTTCTTGGGCCCTTCAGAAAAGAGCTTGTGCGTGTGTGAGGGGGTACATCATTCTAGACATCTCCTCTTAGGATGTGGGGTGATGTGTGAAAAATGGACGAGAGGCCTAAGAGTGCCAGCACACTCTAGTCCCTTGCCAGCACCCTCTCCTCTCCCTCATCCTCTCCCAGCTGTAAGATGTAAGCTGGAACACCAGCCTGACAGAAATGGAGACCAGATGCCTGTATTTCTCCACTGTCACTTGGCTGCTCCCCAACAGATGGAATTCCGATCAGTCTGGGCTGTCTCTTGTTCTTTTGGAAAGAGGGAGTGAGGAGGAGGAGTAGGGAAAGTGGAGGAAGGGGCCATGGCAGCCAACTTGTGGATTCGCCCCAGGCTAAGCGACATTCCCAGTAATGTTCTTGTCCTTGTAGAACATTCAGCTTCCGCTGGCTTCCTGTAGCTCTTTTATGAGAAGCAGTTTCTCTGACTCTGACATAGATTCCAGGAGAGCCAGATGGAACTGCTAAGCTAAGCGAACTGTTTCCTTGCCCCGTCCTCTTCTCTCCACTTTTCTTCAGCGCTGAAACCCCCTACAGCATTCATTTACCCAGCCTCCCCCTTTTCTCCCTCAGGGACAGACCAGGGTGTCCACACAATGAGCCTATTTTATTCAA

Function

symbol description
bnc2 Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within developmental pigmentation and pronephric nephron tubule development. Located in nucleus. Is expressed in several structures, including centrum; gut; hypodermal cell; nervous system; and pleuroperitoneal region. Used to study urinary tract obstruction. Orthologous to human BNC2 (basonuclin 2).

NR:

description
Si:dkey-114f6.1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_11444117_11455995.mRNA True 1147 mRNA 0.50 5 11444117 11456338

Neighbor

gene id symbol gene type direction distance location
CI01000300_11370829_11375624 NA coding upstream 68344 11370829 ~ 11375773 (+)
CI01000300_11323703_11358998 NA coding upstream 84869 11322453 ~ 11359248 (+)
CI01000300_11303493_11313969 NA coding upstream 130037 11303349 ~ 11314080 (+)
CI01000300_11141716_11143148 NA coding upstream 300522 11140851 ~ 11143595 (+)
CI01000300_11044621_11061213 NA coding upstream 382852 11044568 ~ 11061265 (+)
CI01000300_11478840_11479838 NA coding downstream 22445 11478783 ~ 11480053 (+)
CI01000300_11500083_11519381 NA coding downstream 42485 11498823 ~ 11520162 (+)
CI01000300_11553769_11566330 NA coding downstream 96411 11552749 ~ 11566666 (+)
CI01000300_11704476_11708232 NA coding downstream 248138 11704476 ~ 11708351 (+)
CI01000300_11731136_11733070 NA coding downstream 274730 11731068 ~ 11734506 (+)
G415078 NA non-coding upstream 153474 11290408 ~ 11290643 (+)
G415028 NA non-coding upstream 157100 11200215 ~ 11287017 (+)
G414909 NA non-coding upstream 294990 11079100 ~ 11149127 (+)
G414949 NA non-coding upstream 365595 11077919 ~ 11078522 (+)
G414948 NA non-coding upstream 368573 11075337 ~ 11075544 (+)
G415080 NA non-coding downstream 13473 11469811 ~ 11473607 (+)
G415103 NA non-coding downstream 84616 11540954 ~ 11541281 (+)
G415108 NA non-coding downstream 95924 11552262 ~ 11552599 (+)
G415161 NA non-coding downstream 198725 11655063 ~ 11714698 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other upstream 780630 10661680 ~ 10674265 (+)
CI01000300_10604458_10604787 NA other upstream 839355 10604458 ~ 10605033 (+)
G414249 NA other upstream 1070219 10369911 ~ 10373898 (+)
G413459 NA other upstream 2495514 8857687 ~ 8948603 (+)
G411777 NA other upstream 4974412 6469245 ~ 6469705 (+)

Expression


Co-expression Network