G408066


Basic Information

Item Value
gene id G408066
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 29140 ~ 31266 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468875
CATCCTTCTTAATCTTCTCCTCCACTACTTCCAGAGCAGCAGCCAGGGACGCACTGGTCTCCTCCAGTCTGAGTTGAACCATGTTCCCTGAAGCAGAGCCCCCCGTTTCAGCAACTATCAATAACCCTTGGCTTTCCACCTCTATTTTTCCATCTCCATCTTGTAGTTCACCCTCTACTTGTGTCTGTCTGGCTACGCCTACCTTCCTTCTTCTCATTACCACAGGTTCTGCTCCCTCCCCTGTCTCTCTAAAATGACTCCCTGCTGAAGAACCTGAAATCAGGCCTTGTTCACCTTGAAATGTTGTATCAACCTGGATCAGACCTGTCCGTTCCATTCTAGCAATTCCGACTTCCTCTACTCTTTCTTGCTTCCTCGCTTCATCTTCCTCTCTCTGTTTCTCTACTTCTCTCAGCCTCTTTTGCATATCCATTCCAGGCAGCTCCACTTCCAGAGGGCTTGGGATGTCCACTGAGAGACCGGCCATGGAAGACCTCGGGGGCTTCACTGGAGCTGAACCTGAACCTGGTGTAGAGGGTGTTTGTGGGGTTTGGGGTGTTTGGGGTGTCTGTGGGCTCTGAGCTGGAGAAGTTGCTGGACGTGGAGACAGCATGCTTCCCTCCATTGGTTTTGTGGTGACCGGACTCAAAGTCTGTGGTGGATGTTCCAGTTGTTCAATTGAAGCAGGGCTAAAGGAGGCACTGGATGGGCTGAGAACATCTGCCTGAGGAGAGCCAGGAGTTCCAATGGTATGGATTGGCTTGATTTTTACCGGTTTGGGCAATGTAGGAGGCGGACTTGGCTTGGGAGATACTGGAGGAGGGATTTTCTTAGCCTCCACTGGGCTATGTTGACCTTCTGGTCCGGGTAATGGAACCCTCCTTGTAGGAGTTGGGGGATCGAGTTTTCGAAGGGCCATTGCTGGTTTAGGTGAAACTGGGGGTTTTAGTATTTGTCTAGGAAGAGAGCCAAAGCCATCGTGTTGCAGTTCTTCGTCCCTACCACCATCTCCAATGCAAGCTTCTGATACAGGTCTTCTCCGAAAGTTCTCTGGCCCATCTCCATCAGTGCCGTTACTCTGTGGTGGAGCCAATGCCTTGGGCCTTCGCTTTATCGTGCTAGTTTCTGACAGGTTAAAATGTTCACCATCTGAGTAATGTGGTGGTCGTGGTCTTCTCAAAGTTGCTGTGGCATCCATCCGTGACCACTCCTCTTGTGGCAGAGAAGAAACACTCCCTTCCAGATGAGTGATCATGGAACGTGGACGTGGCTCAGGGGCCTGTTTAATTGGGTGGTGGGATTCACAAGGTCCATGATGTGCGAGGTCCTGCATGGCTCGGCTTATCTCAGCCTCTTGTACATTGCTGTCAGGCTGCTTTTGAGAGTCGTAAAATTCACTGATTGTGCGGCGGCGACTATCCACGTCGGAATTCAGAACTTCACGGTTCTGCCGCAGGAGGTTTTGGCTTGCCTGGAGAACAGGTAAAACATCAAAACTCAGTTAGGCATCAGAAATGTAAATGCATTGTATAGGTCAAAATTACTTTTTCTCTCCAGTTACATGGTGTATGCATCTCGAAAATAAGGAAGCGATAATTTCTATTATGTACAGTAAACGATTTCTAAACAGAAATCTCTAATGATTTCTAAAACAGAAAATTCTCATTTGTGAGTTGTTTTTAACTGCATTGTAAAATCAATTGTATGTGCTAAAACAGGCAGTGGGCCAATGGTCATTAGCCATGGTAGCTTAAAATATACGTAAAACAGTGCTATTTAACTACTAAAAATGAGACCAGGAACTTTTTAAGAAAGTAAATAGGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468875 True 1826 lncRNA 0.48 2 29140 31266

Neighbor

gene id symbol gene type direction distance location
CI01000300_00003224_00007587 NA coding upstream 21106 3224 ~ 8034 (+)
CI01000300_00103395_00123529 SLC5A10 coding downstream 72129 103395 ~ 123529 (+)
CI01000300_00150486_00160308 NA coding downstream 119220 150486 ~ 160515 (+)
CI01000300_00180177_00181561 NA coding downstream 148854 180120 ~ 181617 (+)
CI01000300_00226653_00303160 NA coding downstream 195387 226653 ~ 303160 (+)
CI01000300_00313257_00313598 NA coding downstream 281991 313257 ~ 313641 (+)
G408059 NA non-coding upstream 10852 17958 ~ 18288 (+)
G408058 NA non-coding upstream 12215 16689 ~ 16925 (+)
G408056 NA non-coding upstream 13971 14895 ~ 15169 (+)
G408052 NA non-coding upstream 16432 12474 ~ 12708 (+)
G408104 NA non-coding downstream 115732 146998 ~ 147235 (+)
G408149 NA non-coding downstream 198133 229399 ~ 229789 (+)
G408162 NA non-coding downstream 247534 278800 ~ 279317 (+)
G408163 NA non-coding downstream 257388 288654 ~ 288963 (+)
G408166 NA non-coding downstream 263284 294550 ~ 294974 (+)
G408510 NA other downstream 945334 976600 ~ 977099 (+)
G408498 NA other downstream 985801 1017067 ~ 1020734 (+)
G408910 NA other downstream 1601764 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1718634 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 2282143 2312515 ~ 2321088 (+)

Expression


Co-expression Network