G408149


Basic Information

Item Value
gene id G408149
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 229399 ~ 229789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468983
AAAAAACACACAGTAAGCGGTCTGGGAAGTTGGTGAGGTGCCCCAGGTCTAAAAATGTCCTTGTGTGGTCCTCGAGACTTGTTGGACAGCTGGTAAATCCATTTAAAGGGGGAAAAAAAGAAAAATGCTACATCAATCTCGTCATAAAAAGCATTCTGAGCCGAGGTGCAAGTATATTTAACCACTTACATGACTCAGCCGAACACACGATCGCTGTCCAACACTCTTCTTCGTGAGCATTTGAGTGTGAGGTTAAAAACTTGCCTAGAGCGCTATCTGCTGTTAAAAACTAAGCTCAGAATCGATTCGAGAGAGAATCGCGATACATTTACAAAATATCAGAATCGAACCCGAATCATTGCATCACGAATCGAGAATCGATATATTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468983 True 391 lncRNA 0.42 1 229399 229789

Neighbor

gene id symbol gene type direction distance location
CI01000300_00180177_00181561 NA coding upstream 47782 180120 ~ 181617 (+)
CI01000300_00150486_00160308 NA coding upstream 68884 150486 ~ 160515 (+)
CI01000300_00103395_00123529 SLC5A10 coding upstream 105870 103395 ~ 123529 (+)
CI01000300_00003224_00007587 NA coding upstream 221365 3224 ~ 8034 (+)
CI01000300_00313257_00313598 NA coding downstream 83468 313257 ~ 313641 (+)
CI01000300_00324861_00371897 NA coding downstream 94777 324566 ~ 372421 (+)
CI01000300_00373895_00378177 ALKBH5 coding downstream 144106 373895 ~ 378403 (+)
CI01000300_00380880_00388140 MIEF2 coding downstream 151091 380880 ~ 388565 (+)
CI01000300_00390712_00395191 NA coding downstream 160822 390611 ~ 395743 (+)
G408104 NA non-coding upstream 82164 146998 ~ 147235 (+)
G408066 NA non-coding upstream 198133 29140 ~ 31266 (+)
G408059 NA non-coding upstream 211111 17958 ~ 18288 (+)
G408058 NA non-coding upstream 212474 16689 ~ 16925 (+)
G408056 NA non-coding upstream 214230 14895 ~ 15169 (+)
G408162 NA non-coding downstream 49011 278800 ~ 279317 (+)
G408163 NA non-coding downstream 58865 288654 ~ 288963 (+)
G408166 NA non-coding downstream 64761 294550 ~ 294974 (+)
G408171 NA non-coding downstream 90820 320609 ~ 320843 (+)
G408172 NA non-coding downstream 91088 320877 ~ 321076 (+)
G408510 NA other downstream 746811 976600 ~ 977099 (+)
G408498 NA other downstream 787278 1017067 ~ 1020734 (+)
G408910 NA other downstream 1403241 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1520111 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 2083620 2312515 ~ 2321088 (+)

Expression


Co-expression Network