G408166


Basic Information

Item Value
gene id G408166
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 294550 ~ 294974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469008
TATAATTTAAAGGTTTATACTGTAATAATTGCGGTTCATAACTGTTTATTTCACACACTGTAAAAAAATTCTGTTAAATTTACGGTAAAAACCTGTATTTCATTAACTGATATAATGTTAATTTACCAACCTATTGAAGTATTAATATCTGTTTTGTACCTTTGTAATACACTGATAACCACCAAACACAGTGGTGATGAGAGTCACATGATGAATCAAAGCTCATCACAAGCAGCTTTTCCACAAGCTGAGAAGGACAATGCTAATATATAGAAGGTGCACACAGTGTCATTCACACAAACACTAAACACCATCATGGTAACACATGAAATTTTACAAATGCAATAAACATTAATTTAACAACATTAGATGTAACATAAAACCCTAATGTACATAACTGATTAGAAAAAAACTAAGAAGAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469008 True 425 lncRNA 0.30 1 294550 294974

Neighbor

gene id symbol gene type direction distance location
CI01000300_00180177_00181561 NA coding upstream 112933 180120 ~ 181617 (+)
CI01000300_00150486_00160308 NA coding upstream 134035 150486 ~ 160515 (+)
CI01000300_00103395_00123529 SLC5A10 coding upstream 171021 103395 ~ 123529 (+)
CI01000300_00003224_00007587 NA coding upstream 286516 3224 ~ 8034 (+)
CI01000300_00313257_00313598 NA coding downstream 18283 313257 ~ 313641 (+)
CI01000300_00324861_00371897 NA coding downstream 29592 324566 ~ 372421 (+)
CI01000300_00373895_00378177 ALKBH5 coding downstream 78921 373895 ~ 378403 (+)
CI01000300_00380880_00388140 MIEF2 coding downstream 85906 380880 ~ 388565 (+)
CI01000300_00390712_00395191 NA coding downstream 95637 390611 ~ 395743 (+)
G408163 NA non-coding upstream 5587 288654 ~ 288963 (+)
G408162 NA non-coding upstream 15233 278800 ~ 279317 (+)
G408149 NA non-coding upstream 64761 229399 ~ 229789 (+)
G408104 NA non-coding upstream 147315 146998 ~ 147235 (+)
G408066 NA non-coding upstream 263284 29140 ~ 31266 (+)
G408171 NA non-coding downstream 25635 320609 ~ 320843 (+)
G408172 NA non-coding downstream 25903 320877 ~ 321076 (+)
G408197 NA non-coding downstream 77926 372900 ~ 373116 (+)
G408141 NA non-coding downstream 146478 441452 ~ 478136 (+)
G408216 NA non-coding downstream 155564 450538 ~ 461022 (+)
G408510 NA other downstream 681626 976600 ~ 977099 (+)
G408498 NA other downstream 722093 1017067 ~ 1020734 (+)
G408910 NA other downstream 1338056 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1454926 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 2018435 2312515 ~ 2321088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G132547 LOC107591615,LOC107696587,LOC107731336,LOC107696584,LOC107552275 non-coding NC_056717.1 CM032086.1 13118716 ~ 13123966 (+)