G408141


Basic Information

Item Value
gene id G408141
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 441452 ~ 478136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468964
GGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTTTTACATGTGCACGTTTTATTTGGGTTTTCTTGTCAGTGTACAGAGACACCCTGGCTTACAGATGCAAGGGATTGTCCCTTATTCACATACCCTAGGGGAGTCCTGCAAGATATTCACTTTTAAAAGGTAAAGCTTTCCCCATCATTGCAACAATAACAAACTGGGCCAAGTTTAAGGCTGAAGTACAAAAAGAAAAAACAATGTATCGAGTACATAATTTACATAAACACTATAACAAAAGGTCATGTACGCCCACTGTGATGAGGGCAAAGTGGTAGACGCTTCTGGAATGACTAAAAGAAGAAATGTTCACTGAAGTCCTCTCGGGGAAAGCTTCTCCCCCTGCAAAACAACTACCTCCCTTTCCAGTTTCCGCATCCTGAGTCAATGCGCCATACAGAGCAGAAGCCATGCTGATGTCATCTTGTTCGAGAGGTTTAGGTTGGTCGTTCGTTTGAATCCTACTGCATGGCCATTTATGGTGGCAACAGTTCTGTTTAGAAGCACTTCCTGTGGACGATGGATGGGCCGGACTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAAGATGGAGCCACCAATCCAGACAGAGTATTTGCGCTCAGGGGGAGCAATGATCTACAAGAGAAAGAGATGTTAGTTCATCCTTAACCACTGCAAGCAAACATTTTTTTTTAATTTCATAGTTCCATCTTTGAATTCATTTAAGGTGCATCACCTTGATCTTCATGGTGGAAGGAGCAAGGGAGGTGATTTCCTTCTGCATACGGTCAGCAATGCCAGGGTACATGGTGGTACCTCCAGACAGCACTGTGTTGGCATACAGGTCCTTACGGATGTCCACGTCGCACTTCATGATTGAGTTGAAGGTAGTCTCGTGGATGCCGCAAGATTCCATACCTGCATAGAAGGAAACAAAGTTAGTTGACCAGTTGATACAGGAATTGGTAAACGCATAATCTGTTTTAATGCACAGCATGTAACTCACCCAGGAAGGAAGGCTGGAAGAGAGCCTCAGGGCAACGGAAACGCTCATTGCCAATGGTGATGACCTGCCCGTCAGGCAGCTCATAGCTCTTCTCCAGGGAGGAAGATGAGGCAGCGGTTCCCATCTCCTGCTCGAAGTCCAGGGCCACATAGCACAGCTTCTCCTTGATGTCACGGACAATTTCTCTCTCGGCCGTGGTGGTGAAGCTGTAGCCACGCTCGGTCAGGATCTTCATCAGGTAGTCTGTCAGGTCACGACCAGCCAGATCCAAACGCAGGATGGCATGGGGAAGAGCATAACCTTCGTAGATGGGCACGGTGTGGGTAACACCATCACCAGAGTCCATCACGATACCAGTGGTACGACCAGAAGCATACAGGGAGAGCACAGCCTGGATGGCCACATACATGGCAGGGGTGTTGAAGGTCTCAAACATGATCTGTAGGAGTGAGCAAAGTTAGGGATTAAAATAAAATCACTTTAGATGTTTCCAATGCATCCAATTTCAAACCAATACATGGTTAAGGGTGCA
>TU468974
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTGGTTTTACATGTGCACGTTTTATTTGGGTTTTCTTGTCAGTGTACAGAGACACCCTGGCTTACAGATGCAAGGGATTGTCCCTTATTCACATACCCTAGGGGAGTCCTGCAAGATATTCACTTTTAAAAGGTAAAGCTTTCCCCATCATTGCAACAATAACAAACTGGGCCAAGTTTAAGGCTGAAGTACAAAAAGAAAAAACAATGTATCGAGTACATAATTTACATAAACACTATAACAAAAGGTCATGTACGCCCACTGTGATGAGGGCAAAGTGGTAGACGCTTCTGGAATGACTAAAAGAAGAAATGTTCACTGAAGTCCTCTCGGGGAAAGCTTCTCCCCCTGCAAAACAACTACCTCCCTTTCCAGTTTCCGCATCCTGAGTCAATGCGCCATACAGAGCAGAAGCCATGCTGATGTCATCTTGTTCGAGAGGTTTAGGTTGGTCGTTCGTTTGAATCCTACTGCATGGCCATTTATGGTGGCAACAGTTCTGTTTAGAAGCACTTCCTGTGGACGATGGATGGGCCGGACTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAAGATGGAGCCACCAATCCAGACAGAGTATTTGCGCTCAGGGGGAGCAATGATCTACAAGAGAAAGAGATGTTAGTTCATCCTTAACCACTGCAAGCAAACATTTTTTTTTAATTTCATAGTTCCATCTTTGAATTCATTTAAGGTGCATCACCTTGATCTTCATGGTGGAAGGAGCAAGGGAGGTGATTTCCTTCTGCATACGGTCAGCAATGCCAGGGTACATGGTGGTACCTCCAGACAGCACTGTGTTGGCATACAGGTCCTTACGGATGTCCACGTCGCACTTCATGATTGAGTTGAAGGTAGTCTCGTGGATGCCGCAAGATTCCATACCAGGAAGGAAGGCTGGAAGAGAGCCTCAGGGCAACGGAAACGCTCATTGCCAATGGTGATGACCTGCCCGTCAGGCAGCTCATAGCTCTTCTCCAGGGAGGAAGATGAGGCAGCGGTTCCCATCTCCTGCTCGAAGTCCAGGGCCACATAGCACAGCTTCTCCTTGATGTCACGGACAATTTCTCTCTCGGCCGTGGTGGTGAAGCTGTAGCCACGCTCGGTCAGGATCTTCATCAGGTAGTCTGTCAGGTCACGACCAGCCAGATCCAAACGCAGGATGGCATGGGGAAGAGCATAACCTTCGTAGATGGGCACGGTGTGGGTAACACCATCACCAGAGTCCATCACGATACCAGTGGTACGACCAGAAGCATACAGGGAGAGCACAGCCTGGATGGCCACATACATGGCAGGGGTGTTGAAGGTCTCAAACATGATCTGTAGGAGTGAGCAAAGTTAGGGATTAAAATAAAATCACTTTAGATGTTTCCAATGCATCCAATTTCAAACCAATACATGGTTAAGGGTGCA
>TU468966
GGGAACAAGAGCCAAAGAGAAGTAGGAATCATATGACAGAGTCACAAAAACACACCTGTGTCATCTTCTCCCTGTTGGCTTTGGGATTCAGGGGAGCCTCTGTAAGCAGGACAGGGTGCTCCTCAGGGGCAACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCATCCCAGTTGGTCACAATACCGTGCTCAATAGGATACTTAAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCATCTCCCACATAGGAGTCCTTCTGTCCCATGCCAACCATCACTCCCTAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGATTAGGCACCAACCCACTCAAATGAGGACGTGCAAAGAAAATCAAGTAGTTTAAATCGTTCGAAGGGATGAGGGGGAAGCATACATGTTTACAACTGGTTTGAAATGGTTACATTCAGAAAGTCTGTTTTTCACTGCACTGACAGCTCAGTTCAAGTTTTTGTTCTCATCTCAGAGTTACATAATGACAAAATGACACATTGTTTTCTGTAGAGCTGCTTTTTGAAGGTTAAATAACTTAAGTCTTTAAATTAACACCACTGAATTAAACTGAGCTCAAATGACACTACAATCTGTTGAGCTGCTTTACAGCTGAAATTGCTTACAAAAAAAAAAAAAAAAAAAAAAAATTCTTACTGTATAAAAATCACTATAAATTTTCCACTTGAAATGTTTACTACATTATAATTGTACTTGTGTTTTTAATGCTACATAAGCATATGATGACAATTCACAAACATTAAATACACTAATGGCCCGAAAGAAATATATATTTATACCTGATGCCTGGGTCGGCCAACAATGGAAGGGAAAACAGCACGAGGGGCATCATCTCCAGCAAAACCGGCTTTGCACATACCGGAGCCGTTGTCAACGACCAGGGCAGCGATTTCCTCATCCATGGCTGTATTAGTAGGTTATTGTGAACAAAGGGTATGAAGATCTTC
>TU468968
GGGAACAAGAGCCAAAGAGAAGTAGGAATCATATGACAGAGTCACAAAAACACACCTGTGTCATCTTCTCCCTGTTGGCTTTGGGATTCAGGGGAGCCTCTGTAAGCAGGACAGGGTGCTCCTCAGGGGCAACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCATCCCAGTTGGTCACAATACCGTGCTCAATAGGATACTTAAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCATCTCCCACATAGGAGTCCTTCTGTCCCATGCCAACCATCACTCCCTAGATTTAAAAACAGCACGAGGGGCATCATCTCCAGCAAAACCGGCTTTGCACATACCGGAGCCGTTGTCAACGACCAGGGCAGCGATTTCCTCATCCATGGCTGTACAAAAAAAATAAATAAAATAATTTAAATAAGTTAGTTAAATCGTCAAAACAGTCATCAGTATCTCTTGTAAGCTGCGATGATGCTTGATGTAAGCATGACTGGCCAGTAGGCGGCGCAAAGGCGCAGGGTTGAAACCAAGCGATTTGAGACAAAGGAAGTGGTCAGGCAGTCTCACTATTGCCTTATATGGCAATAAGTTCGAGCAGCTCAATGCCGCCGATTCAGCGCGTGGAATCAGACCAACGGACACGACCACTCCCAGTTTCAAAGGCCGAGATAAGCGCTTTACCAAACGACCACCATATAATCCCAATGCTTGAAAAAGTTAACCTCTTTGTCAAAAGGATCTGTAATGCAGGCATTTCAGCAGATACTACAAGTGCTGCTATCATGCGTCATAGGAATTAGGAGTGGCAATCCTGTAAAATTCGTCACAGCTAAACGATTAACAAAAATAAATTAACAATATTTCAAACGTTTAACCAACTTAGTCGTCAGTTTAACGAACCAAACGGCTGTGATGTTAGATGCCGGTTAATGTTTTATAGTAGCCACACCCACCATTCAAACTGCGAACACAGCGACACTATTCCACTAAATCCACATTTAATTGCATTATATGACTCAATTAAAGCATTTCACGCCCAAAGCGTGGATTTAAGCCCCTCTGGTTACAGAAAGAAGCTTTACGGTTAAATCCTTCCAGTTAAGAAAGCTAGAATTGCTACCGGTTGATACTACTAAAAGATTTAGAAAAAGCACACAATATTTGTAACCTTAAAAATAGAGCAGTAAAATCCACAGTAAACTACACCGTTGACTTAAACTGTATTCAAAATTAAAACTCAAATCACATACCAAATATGAACTGAATATGCGTAACTTAAAAAAGCAATAAAAAATAAACCTCCAACCAGCGCCATTGTTAATATTAACATAATACTAAATACCACTTAGTATTGTTATAAAGGCATTCTCACCTGTGTATTAGTAGGTTATTGTGAACAAAGGGTATGAAGATCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468964 False 1578 lncRNA 0.46 2 441452 475962
TU468974 False 1501 lncRNA 0.46 4 452732 475962
TU468966 False 1010 lncRNA 0.39 2 476139 478136
TU468968 True 1429 lncRNA 0.41 2 476139 478136

Neighbor

gene id symbol gene type direction distance location
CI01000300_00422911_00432735 NA coding upstream 8680 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 45709 390611 ~ 395743 (+)
CI01000300_00380880_00388140 MIEF2 coding upstream 52887 380880 ~ 388565 (+)
CI01000300_00373895_00378177 ALKBH5 coding upstream 63049 373895 ~ 378403 (+)
CI01000300_00324861_00371897 NA coding upstream 69031 324566 ~ 372421 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding downstream 7758 485894 ~ 492836 (+)
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding downstream 30340 508476 ~ 514751 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 204687 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 217131 695267 ~ 729746 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 253872 732008 ~ 734966 (+)
G408197 NA non-coding upstream 68336 372900 ~ 373116 (+)
G408172 NA non-coding upstream 120376 320877 ~ 321076 (+)
G408171 NA non-coding upstream 120609 320609 ~ 320843 (+)
G408166 NA non-coding upstream 146478 294550 ~ 294974 (+)
G408163 NA non-coding upstream 152489 288654 ~ 288963 (+)
G408235 NA non-coding downstream 65113 543249 ~ 543488 (+)
G408238 NA non-coding downstream 72344 550480 ~ 550839 (+)
G408239 NA non-coding downstream 73363 551499 ~ 552763 (+)
G408413 NA non-coding downstream 187891 666027 ~ 666266 (+)
G408414 NA non-coding downstream 188370 666506 ~ 666733 (+)
G408510 NA other downstream 498464 976600 ~ 977099 (+)
G408498 NA other downstream 538931 1017067 ~ 1020734 (+)
G408910 NA other downstream 1154894 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1271764 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1835273 2312515 ~ 2321088 (+)

Expression


Co-expression Network