G408239


Basic Information

Item Value
gene id G408239
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 551499 ~ 552763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469110
AAAGCTTGGGGTAATTTTCATTTTAAAGTGAACAAATTCTTTAAGGAGAGCTAAAAAATAATTTTTCAAATCGGTCATGCTTACAATTTTCATCAGCTGGACGATAAATTTGGTGAAAACTTCCCTTTGACTTACACTGAAGGACAGACACAAGAAAATCTACAGAAAGAATTATCATAGGCCCTGTTTACACTTGGTATTAAGATGCGTTTTGGTTGATCGGATCACAAGTGGACGACGCTAAATACAGGTGTAAACGGGGTCTAAAACGTTTTGAGCTTGTCCACTTTCGACCACTTCCAGAGGTAGTCGAAAATGCATTCGACTGTGGTTCAATGTGTTCGAACAGCTGCAAAAGACCGCCTACTTGCCACCTAACGTATAAACATTATGGGAAACTACGCTAGCCAGATGGGATTTAAACTTTGTCGACTGAAGACCCAAGTTTGGTTTAGAGATGAAAAACATACCAAGCACAATGTTCTCACGCCATTCCTGATTTCTAACACGTACTCACAGCGTGGTCTTGCGGCTATCAGAGCAGAAATGAAAGCTGATGCTCTCAGTGTGTTTTTCTGTCGCCTCCGTGAGCGTTCATATGTTAATTGCGTAAGCTTATTTTGTCCATTAGATGGAAAGATCTGAAAAAAAACCCCATACATTTACCCGCCCATAGATGCTCCCCTCGAAGAAATCAGGACAGAAGTGGTCGAAAGTGGAAAAACACCAGCTATAAAGGGGTATGTGTCTCCCTCATCCACTTGTGTCCGATCAACCAAAACACATCTTAAACAGGGCCATGGAGACTTTGGTTGCTAGGGCAGTCTGAATGGTTACTTCCTGTCCCCTCACAATACCCTGACATTGTGGCAATGTTTTTTGCATCGATAAGCAACGCACAAGATTTCCTGTTTGCTTTTTGACAAGTGGTAATGTAATTAGCAGTTTTCCAGTGATTATAAGTTAACTCATTAACTTGACAAAAACAGTGGTTTTCTGTAATTGGGTTTAAAAGAAAAACAGCATTACAATTTCATATCAAGCTTCATTTTATGAAGCAAAAATCCACTGTTATGCCCCTTGACCAAAATATGTGAAAAACTACCTTTTAGCTTCACTAGCAGGGGACTATTCATCTGCCAACCTGTCAGTTGGATCTTTTGAATACTTGCATATTTAAATTTCACCTAAAAGAATGAAACATACTGTTACTGGTCATTTCAAAATAGCCTAAATAGTCTCAAGTGACAGTAAAAATATATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU469110 True 1265 lncRNA 0.39 1 551499 552763

Neighbor

gene id symbol gene type direction distance location
CI01000300_00509051_00514671 C24H16ORF72, CUNH16ORF72, C6H16ORF72, C16ORF72, C2H16ORF72, C16ORF72.S, C16H16ORF72, CLG13H16ORF72, 1810013L24RIK coding upstream 36748 508476 ~ 514751 (+)
CI01000300_00486146_00492357 FSCN1B, FSCN1 coding upstream 58663 485894 ~ 492836 (+)
CI01000300_00422911_00432735 NA coding upstream 118727 422591 ~ 432772 (+)
CI01000300_00390712_00395191 NA coding upstream 155756 390611 ~ 395743 (+)
CI01000300_00380880_00388140 MIEF2 coding upstream 162934 380880 ~ 388565 (+)
CI01000300_00685357_00687717 TLR2 coding downstream 130060 682823 ~ 688434 (+)
CI01000300_00695491_00729459 PRKCB, PRKCBA, PRKCBB coding downstream 142504 695267 ~ 729746 (+)
CI01000300_00732352_00734178 PRKCB coding downstream 179245 732008 ~ 734966 (+)
CI01000300_00740073_00744573 NA coding downstream 186333 739096 ~ 746407 (+)
CI01000300_00776177_00776812 NA coding downstream 223254 776017 ~ 776938 (+)
G408238 NA non-coding upstream 660 550480 ~ 550839 (+)
G408235 NA non-coding upstream 8011 543249 ~ 543488 (+)
G408141 NA non-coding upstream 73363 441452 ~ 478136 (+)
G408216 NA non-coding upstream 90477 450538 ~ 461022 (+)
G408197 NA non-coding upstream 178383 372900 ~ 373116 (+)
G408413 NA non-coding downstream 113264 666027 ~ 666266 (+)
G408414 NA non-coding downstream 113743 666506 ~ 666733 (+)
G408418 NA non-coding downstream 117341 670104 ~ 670342 (+)
G408420 NA non-coding downstream 128650 681413 ~ 681634 (+)
G408437 NA non-coding downstream 145422 698185 ~ 703768 (+)
G408510 NA other downstream 423837 976600 ~ 977099 (+)
G408498 NA other downstream 464304 1017067 ~ 1020734 (+)
G408910 NA other downstream 1080267 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 1197137 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1760646 2312515 ~ 2321088 (+)

Expression


Co-expression Network