G408498


Basic Information

Item Value
gene id G408498
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1017067 ~ 1020734 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469410
AGCTTTTTGTATTCAGTTTTTTTTAAGTGAAATTTAAGTGTTGTTACCATGGGTGGAACATCTCGAGCCCACATGGTGAGAGTGTTCCACTGGACATCATGCAGAAAGTTGGAGCGATGTTCACCCAGTCCATATATGAAACGTGACGGTAATGATGTGGACATCTGCAGGAACTGATCCGCATAGAAGAGAGGAGCTATGGATGTATTCAGCAGCACAGTTCCTGTCTGCGTTCTCTTGACAATCAGCCCGAAAGGTTCTTTGATGAAGTCTACGGTGTAAGAAGGATTTGATGCTCTTTTCTGAACCACAGGAACATCTATAGGCACCTCGTACCTCTTTTCATTTGGGTCTGTTATCTTCACACGCAGTCTGTTGTCTTCCTCAAACAACACTTCCAGCTGCAGTGCATCTATGTCTTTTGGATAATATGTCTTACTGTTCCGGAGCAGTTTTCCCACTTTCCCCATCTCGGTGTCAATAATGGACACCAACTCATAGGATGGATAGTCAGGTGTGTAGAAACACCACGGCACTCCATTCCGTCCGGATGTCTTAGCCTGTGACTGCTGTATGAAGCAGCAGTTTCGAGCATGGCACATCTCCTCTGTGACCACCACGCCTCTCTCAGGATAACAGTCAAACCTCCAAGCTTCTGGAATCTTCAAGCAGGATTGTGGTTGTAGCCACGTCCCGTTTGGGCTTTTAGCCACAGCAGGTGGAGGGAGTCTGTGGGGTTCTGTGGAGGGTGGATTATGAAACCAAAATATGGTCCCAAGCATCCAAACACCAGAGAGAACCACAATAAGTCCTCCAAGGGTCAGCAGGGCAACGGTGATGGAGCAGCGAGGGCTCTGGGGCAGCAGGGGCTGTTCTGGGCCTACTTCCTTCCCATCTGTGTCTGTTGACTCATCAGGATCCAATAACGCAGCTCCAGAGAAATTAACCTCCTCAGGGGTGAGTCTCTTGTACGAAACCATTTCAAACACTTTTATGCTGTCGGAATATGCAGGATATTATAAGGTTTTAATGTTTGACACACTACATTACATTAATGAATATCCTATGGTTTTTGCACAGGTAAATGTCACGGGTGTTTCATGTCTTGTGAAGTTAGTGTTGCTGCGTGCCCTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469410 True 1135 TUCP 0.47 4 1017067 1020734

Neighbor

gene id symbol gene type direction distance location
CI01000300_00864011_00867698 UNCX4.1, UNCX coding upstream 148296 862740 ~ 868771 (+)
CI01000300_00807040_00826385 CHTF18 coding upstream 190632 806846 ~ 826435 (+)
CI01000300_00781242_00787814 PLK1 coding upstream 228916 780675 ~ 788151 (+)
CI01000300_00776177_00776812 NA coding upstream 240129 776017 ~ 776938 (+)
CI01000300_00740073_00744573 NA coding upstream 270660 739096 ~ 746407 (+)
CI01000300_01115718_01128729 NA coding downstream 94064 1114798 ~ 1128760 (+)
CI01000300_01128973_01131417 ELFN1B coding downstream 108078 1128812 ~ 1131441 (+)
CI01000300_01225430_01228695 PMM2 coding downstream 204696 1225430 ~ 1228987 (+)
CI01000300_01241607_01253459 RGS11 coding downstream 220873 1241607 ~ 1254009 (+)
CI01000300_01272675_01273342 NA coding downstream 251941 1272675 ~ 1273753 (+)
G408494 NA non-coding upstream 10152 1005678 ~ 1006915 (+)
G408496 NA non-coding upstream 17682 999103 ~ 999385 (+)
G408522 NA non-coding upstream 21094 995580 ~ 995973 (+)
G408521 NA non-coding upstream 21569 995090 ~ 995498 (+)
G408495 NA non-coding upstream 24238 992278 ~ 992829 (+)
G408509 NA non-coding downstream 35082 1055816 ~ 1066158 (+)
G408502 NA non-coding downstream 113437 1134171 ~ 1134489 (+)
G408525 NA non-coding downstream 117690 1138424 ~ 1138656 (+)
G408528 NA non-coding downstream 120404 1141138 ~ 1141432 (+)
G408529 NA non-coding downstream 121137 1141871 ~ 1142105 (+)
G408510 NA other upstream 39968 976600 ~ 977099 (+)
G408910 NA other downstream 612296 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 729166 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1292675 2312515 ~ 2321088 (+)
G409984 NA other downstream 2250951 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2880454 3901148 ~ 3902892 (+)

Expression


Co-expression Network