G408607


Basic Information

Item Value
gene id G408607
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1291816 ~ 1292458 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469521
TATTTATTTAGGTTTGAATAACAGGGATTCCTGTCCAGACAGCAATAAACAATGCATCTGAATATCCTTGAACCGGCTGAACTTAAAAATACATATGTAAAAGAACTGACTTAAAATACATATAAAGCAGGTTTTTATAGCATATCTCACCCACAGATATAGCATATCTCAAAAAACTACTGCGCACACGCATCTTTACTGATATGATAAATATCAAACATGTGAATGTCCTACCACTGAAAATAAAATCAATAAAATCAAGTTTGAAAAAAAGCAGGTTGATTGTAACTGAGCACTGAAGGAAATGATTATAAACAGTATATCCTGATTATTGGCTAACTATGATTATATCCTGTGTGATTATGTAATTGCCTTCATCTACAAACTGATATCAGAGATGTCATGCAAATATACACTACCAAAGAGCCAATAGAATAGAAAAGACTACTATATAGTAAAATTTCATATAGCATTTTGACTGTCCACTTGGTCCTCCACATAGTCATTGGCAAAGTTAAGAATATTTTTCAATGCATCTAAAATCAGAATATCTACTGTTGTGTTAGTAGTACGCTCCTCATGGTAGTTTTTCACAGGATAAATGCAGTTCACAGGAACTCCCAGTTTGACAGAACACTCCTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469521 True 643 lncRNA 0.33 1 1291816 1292458

Neighbor

gene id symbol gene type direction distance location
CI01000300_01275725_01282289 NA coding upstream 9388 1275365 ~ 1282428 (+)
CI01000300_01272675_01273342 NA coding upstream 18063 1272675 ~ 1273753 (+)
CI01000300_01241607_01253459 RGS11 coding upstream 37807 1241607 ~ 1254009 (+)
CI01000300_01225430_01228695 PMM2 coding upstream 62829 1225430 ~ 1228987 (+)
CI01000300_01128973_01131417 ELFN1B coding upstream 160375 1128812 ~ 1131441 (+)
CI01000300_01303949_01305865 NA coding downstream 9449 1301907 ~ 1306339 (+)
CI01000300_01331788_01335474 NA coding downstream 37901 1330359 ~ 1335569 (+)
CI01000300_01343814_01353541 TRIM2, TRIM2B coding downstream 51356 1343814 ~ 1355389 (+)
CI01000300_01373306_01377544 FGB coding downstream 80762 1373220 ~ 1377648 (+)
CI01000300_01390134_01416227 LRATB coding downstream 97266 1389724 ~ 1416713 (+)
G408588 NA non-coding upstream 36840 1254776 ~ 1254976 (+)
G408587 NA non-coding upstream 39347 1252104 ~ 1252469 (+)
G408586 NA non-coding upstream 41633 1249980 ~ 1250183 (+)
G408585 NA non-coding upstream 47467 1244119 ~ 1244349 (+)
G408505 NA non-coding upstream 56602 1235002 ~ 1235214 (+)
G408609 NA non-coding downstream 32404 1324862 ~ 1325451 (+)
G408614 NA non-coding downstream 43346 1335804 ~ 1336027 (+)
G408620 NA non-coding downstream 88104 1380562 ~ 1380835 (+)
G408628 NA non-coding downstream 150166 1442624 ~ 1442884 (+)
G408634 NA non-coding downstream 169697 1462155 ~ 1462416 (+)
G408498 NA other upstream 271082 1017067 ~ 1020734 (+)
G408510 NA other upstream 314717 976600 ~ 977099 (+)
G408910 NA other downstream 340572 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 457442 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 1020951 2312515 ~ 2321088 (+)
G409984 NA other downstream 1979227 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2608730 3901148 ~ 3902892 (+)

Expression


Co-expression Network