G408620


Basic Information

Item Value
gene id G408620
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1380562 ~ 1380835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469534
ATGTACCATTAAAGTACCATTATGTAAACTTTAGGTACTAAAATGTACATTTAAGGTACTAATATGCACCTTTTAGGGGTAAATAAGGTACAAACGTGTACCTTTTGTAAAGGTGCCACTTCAGTGACAGATTTTGTAACTTTTTCTGAAAGTGTATGTATCCTAAACATACACAATTAAATAAAAATGTCATACTTTATTTGATATAATTACAGCTTAGTTGGAAATGATGCCCAATAAAAATATCTACTTTGATTTTTTTTTTTCTTCACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469534 True 274 lncRNA 0.28 1 1380562 1380835

Neighbor

gene id symbol gene type direction distance location
CI01000300_01373306_01377544 FGB coding upstream 2914 1373220 ~ 1377648 (+)
CI01000300_01343814_01353541 TRIM2, TRIM2B coding upstream 25173 1343814 ~ 1355389 (+)
CI01000300_01331788_01335474 NA coding upstream 44993 1330359 ~ 1335569 (+)
CI01000300_01303949_01305865 NA coding upstream 74223 1301907 ~ 1306339 (+)
CI01000300_01275725_01282289 NA coding upstream 98134 1275365 ~ 1282428 (+)
CI01000300_01390134_01416227 LRATB coding downstream 8889 1389724 ~ 1416713 (+)
CI01000300_01419087_01421103 LRATB coding downstream 38252 1419087 ~ 1421332 (+)
CI01000300_01426499_01431069 RBM46 coding downstream 45218 1426053 ~ 1431264 (+)
CI01000300_01480400_01484276 NPY2RL coding downstream 98999 1479834 ~ 1484713 (+)
CI01000300_01513060_01515885 EIF3F coding downstream 132070 1512905 ~ 1515885 (+)
G408614 NA non-coding upstream 44535 1335804 ~ 1336027 (+)
G408609 NA non-coding upstream 55111 1324862 ~ 1325451 (+)
G408607 NA non-coding upstream 88104 1291816 ~ 1292458 (+)
G408588 NA non-coding upstream 125586 1254776 ~ 1254976 (+)
G408587 NA non-coding upstream 128093 1252104 ~ 1252469 (+)
G408628 NA non-coding downstream 61789 1442624 ~ 1442884 (+)
G408634 NA non-coding downstream 81320 1462155 ~ 1462416 (+)
G408851 NA non-coding downstream 105999 1486834 ~ 1487716 (+)
G408888 NA non-coding downstream 142015 1522850 ~ 1523234 (+)
G408887 NA non-coding downstream 153475 1534310 ~ 1538291 (+)
G408498 NA other upstream 359828 1017067 ~ 1020734 (+)
G408510 NA other upstream 403463 976600 ~ 977099 (+)
G408910 NA other downstream 252195 1633030 ~ 1634969 (+)
CI01000300_01753916_01754815 NA other downstream 369065 1753916 ~ 1754980 (+)
CI01000300_02313596_02320912 NA other downstream 932574 2312515 ~ 2321088 (+)
G409984 NA other downstream 1890850 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2520353 3901148 ~ 3902892 (+)

Expression


Co-expression Network