G408887


Basic Information

Item Value
gene id G408887
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1534310 ~ 1538291 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469812
ACAAAATTTCACATCCTTGCAAAAATGTTTTAAATACATATCACTATGGTAGCACAAATGTCAAAGAAAGAATTGCTAGTGTTTTCCCCATTACACAAACATCTGAATATCTGTTTTCATTTTCAGCTAACAGAATCCATTTTTAGTAGTTACATAAACATGGACTTTCCTGAAAATTAAGATTTACTCAGAATCACCACAGAATGATTATTCACTCAGTACATTTTAAGAAATAATGACTAATCAAAAGTATAGTTTACCCAAGACACGTTAGTCATCATTTACATAACCTCATGTTTTTTTCAAATTCCGTGCAACACAGTTTTGAAAGAAATCCTAGCAAGTCTTTTCACGTCTGATTCATGCGTTGAGTTTTCTGACTCAGATCTTTCCAATAAGTTGATCCACTTCACAAAACCATTCTGAATGATTCATTTAGGTGTCAATTAATCCAGTTCATCCTTTTCTTGTACTCCACAGAAGAAAGTCAAACAGGTTTGGAATTACATGAGGGTGAGTAAATGATAACACAGTTTTCATATCAGGGTGAACTATACATAAATTTAAAGCAGCCGACAACAAAATATAACTTTAGATCAGAGATGCAAATATATGTTAATTCTTGCCACTAGAGGTCGCTTATTCAAAACAAAGGCGCAGCTTGATGACACCGTAAATGAGTGTGGAATCATGGAAGTTGTCATCTTCACCTCCACAGCCAGCCGATGGTACGGAATCCGATGAACGCGGGCAGAAATCATGTTCATGAACGAGTTAATGTATTAAAGTTTTACTAACATTACGGTGGTATGAAGCAGGACAGGTTGAGAGCCGTGGGAGCGGAAGGGGCCACTGGATCAAATGCTAATGAAAGACACCTGCGATTCACACCGATCTCGAGTCCAGCTGAGCTTTTATTGGATATCATTAAATTGCCAGTGCATTGTCTAATTTATTAACATCATTAATGTGATTAGATGTAAAACTTCTTGCTTCGGATGCAATCAATAACTTATTTCTAATTTGATTTATTTATACTGTTGTGCTGGGTAAGAAATTAATAAGGGATTGATACAAATGGCCACAAAATTCAAAAAAGTACTTCTGTCATTTAATCTAATGTAGATCCAATAGATCTGGATTTTTATATTACAACATATGATATAATTATTTAAAAAGCAATTTAACAAGAGCAAGAGCAAGCTGTTTTCACAAATTTGAGCACAACTGCAAATGTGATATCGATTTTATACAAATGTTCAATAAACAAAACATTGTTTAGGCATTTGTAATTTTACCTATTTGGATGCAATTTCTGTGCCACTTGCAGTGCAACAATGAATTTTGTTGTTAGTGATTTCATTTGATTGTTAACAGCTCTATATATTGTCTTATTATTCTAATTGTAGCTATTTATTGAATAAAAATAAGACATTTCTCAGGCAGTAAATGTGGATCTTTCAGATGAATTTGAGTGCTAATCGGGTCTTGGTCTCGACTCGGTCTCACCCTGCCTTGGTCTCGTCTTGGTCTCAACCCCTAAAAGTCTTGTGCTGCGTCCCAATTTGCATACTATCCGTCGTAAATAGTATTCGAAATTAGAATTAATGTGTCCCAAATCGTAGTATGTTGAAATGAGTATTCCAAAGATACCCGGATGGTCTACTTTTTCCGGTTAGAATCCGAAGTGCAGATCTGTGCACACTCTAACGGCTAATATTGCCCATAACACATTGCGCTGTGGACGAGGATTCGATTAGAACTACAAATACGAATAAAAAGTGTTAAAAAAACTACAAACGTGGGATGTGCGAGTACGATGGTTAAGCAGAGCGTTTAAGATAAAGGGGTTTGAGTGATTAATAATCAGTATCTAACCTGATGAAAATATATTTATTAAATGTTATCCACGTTATATTTCATCAGCAACAGCATTGTGAACTTTTATAACGATGTGTTTGGTCAATTTGGTTTGGTTAAATGCATCATTATGAGGAGAGTTCTCCACATCAAAGACCCATGACTGGCAGATCAACGTGCGACTACATTTCTCTCCGGAACGATAGGAAATTCAATTTAATTGAATGTGGAGGATTTTAACTGTGACAAGATGATTGACAGGGCAGTTTAAATGGTTACAGGTTGCGTAACTAAGCGACAAACGTCCGTTAAAAGTAGTATGTCCCAAAGCTTGCACACTCTTCTGCTACACACTCAAAAGTATGTACTTTTTCTTCACAAAAACAGTACATACTTTTAGGGCGTAGTATAACTAGGTGAATTGGGATGCAGCATTGGTCTTGTCTTGGTCTGAACACATACTGGTCTTGGTCTTGACTTGGTCTCGAATTAGGTGGTCTTGACTACAACACTAGCTATGAGAGACTTGTTGCACTTTGCAGTAATCTAGATCGATATTTGTAAAACTGGAAATCAAAGGTAGCGCGGATATGACGTCATCCGGTCTGTGTCCTGGTTAAAATTGCTGATTTCTTTGGATTTAAACATTGTTGGAAATGTTTGGGATAATGTAAGTACACAAGTCAAAAAAAAATATAATATTGTTCTAGTGATGTTTGGATATTTTAATCTAAAAATCTTACATATTGTGCCTTTAACAGTTTATATTATTTGTTGAGTCCCATCATTTAGGGCCAAAATTCTGAGCATGGCTACTATAACTTCATCATCTTAACAGTGGTGAGAGTTGTGTTCTCCTGATCATTCGGGCAGTCCTCTTCATCTTCATCTTCCTCTTCCTCTCCATCCTCTTCATCAAGTTGGAGGCTTCCAGAAGAGAAGCGCATGCGTGCCAGTGGTCCAGAACGTACCACTTTACCCAGTGCAGGAAAATATGGGTAGAAGGTGTCTGAATCCGAATCACTATAACTACCTGTGCCGAGTACACATAAAGAAGTGGGTCTTTCTGGGAGAGGGGCAGGACTTAGAGGAAGGTAGGTGGGCCTGGCAGGAACCTGATGCCGAGAAAGGTGTGGATAATATCCCAGCGGGCGATACTCGGATGCATATGCAGCAGCATTTGAGGCAAGTGTAGGTCGCTGGAATTTGAAGTCTGGTTGGCTTGAGGTTCGACGCGGCAAGCCGGTCTGAAAGGTGGAGTCGTCACTGTAATGGCCTGCTTCCACTCTACTTAAGTCTAGTTTCCTATTCAACCCAGCCCTCAGCCCTAGTCCTCCTCTGGGGTACGGTCTTGATTCGACTAATCCCAGGCCAGCAGGACGGAGCCTTTCCTGCTGCTTCTGAAGTTGTGGCGACAAGCAAGAGGATGGCAAGGACGAGTGGGCAATTTGTCTGGGCAAGTATTGCAGAGGCACATGGTTGTGATGGGTTTGAGGGAGGCGGTCTAGGGATGAAGACGTGTGGTCTTGCAGTATGTACGGGTGAGTGGCGAGTGGGAAAGTGGGCAGAACAGGGTGGAACTGGAGGTGGGGCGTATTAGGATAGAGGAGCACGAGATGCTGAGCGTTGGGAGACAATCGTCGCTTTGCCTTCTGTCTCTGGGCTCCTCTACCACGATGTTCTACTCCTGATGTAGACAGGGAACGAAGCTTGGGTGAGGCAGAGTTGCTTGAGAAGGCAGGATTTCTTGACAAGGGCCTGGATCGCTCGAGCTCATTAGTGAACATGACTTCCACCGCAGATAGACTGCGCTTTGCTACGCCTGTCTGTTCGCTGTGTTGCCCGGCAACAGTTTGGTCGGGAGGTAGATGCTCGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469812 True 3737 lncRNA 0.40 2 1534310 1538291

Neighbor

gene id symbol gene type direction distance location
CI01000300_01527830_01531871 NA coding upstream 2291 1527830 ~ 1532019 (+)
CI01000300_01519715_01526925 NA coding upstream 7159 1519579 ~ 1527151 (+)
CI01000300_01513060_01515885 EIF3F coding upstream 18425 1512905 ~ 1515885 (+)
CI01000300_01480400_01484276 NPY2RL coding upstream 49597 1479834 ~ 1484713 (+)
CI01000300_01426499_01431069 RBM46 coding upstream 103046 1426053 ~ 1431264 (+)
CI01000300_01571005_01611574 DACHB coding downstream 31321 1569612 ~ 1611574 (+)
CI01000300_01753916_01754815 NA coding downstream 215625 1753916 ~ 1754980 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding downstream 233493 1771784 ~ 1783801 (+)
CI01000300_01801423_01807504 CNGA3 coding downstream 263132 1801423 ~ 1808125 (+)
CI01000300_01976057_01980856 NA coding downstream 437766 1976057 ~ 1981187 (+)
G408888 NA non-coding upstream 11076 1522850 ~ 1523234 (+)
G408851 NA non-coding upstream 46594 1486834 ~ 1487716 (+)
G408634 NA non-coding upstream 71894 1462155 ~ 1462416 (+)
G408628 NA non-coding upstream 91426 1442624 ~ 1442884 (+)
G408620 NA non-coding upstream 153475 1380562 ~ 1380835 (+)
G408890 NA non-coding downstream 4615 1542906 ~ 1543240 (+)
G408891 NA non-coding downstream 5616 1543907 ~ 1545272 (+)
G408892 NA non-coding downstream 7028 1545319 ~ 1545845 (+)
G408893 NA non-coding downstream 7677 1545968 ~ 1546238 (+)
G408894 NA non-coding downstream 8546 1546837 ~ 1550388 (+)
G408498 NA other upstream 513576 1017067 ~ 1020734 (+)
G408510 NA other upstream 557211 976600 ~ 977099 (+)
G408910 NA other downstream 94739 1633030 ~ 1634969 (+)
CI01000300_02313596_02320912 NA other downstream 775118 2312515 ~ 2321088 (+)
G409984 NA other downstream 1733394 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2362897 3901148 ~ 3902892 (+)

Expression


Co-expression Network