G408910


Basic Information

Item Value
gene id G408910
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1633030 ~ 1634969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU469837
GTGAGTAAATCATGGACTAATTTTCATTTTTGGGTGAACTATCCCTTTAAGTTCACCCAAAACTTAACCCTCATGTTGTGAGGATTTTCTATTTCCCAAAAAATGTTAGTTAATTAATATTATTGCATTGGACTAAAACTTACTGACTTCGCTCACACCCAAAAATTCTGGATAATTTTTGTACTTATTTGGGATTTTTTCCCCCACCTTGTTACACTTGTGGTGTTGCTGGTCAATAAGGACCGACCTACAAAAAATAGCTTATAAATCTCTCGTTATGTTATATTATCACCAAATATTGGATTCAATCTTTTTGTCAACTTGTTTTCTTTCAATTAGGACAGGTTTTGTATTTATTTTGCAAACTGACTGGTTGTAGGCCTCGTTAAAAATAATCATGCAGGTGTGGAATGACATGGGGAGGGGGGAGTCATTTTTGGGTGAACTATCCCTTTAATGATATGATGTAATGAAGACACAAAAATGCATCCTGGCCTGACTATGGCACTTTTCTATCCCTTCTGAATCTCTGTCGTCCATCGTTTCATTTATTCATCCCATCTGTCAATGATTTGGTTAAATCTCAGAGAGAAATGACAAATATTGCAGCAGCAAACAAAAGAACAAACAAGAATCGGTTGTTGTTAAGGTAATAGTTATTGATATCATCACTGGTTATTGTTATTATCAAAGTGCTGTACAGTACATACTAGCAATACTATAGCTGCGTGGTCACAGAATCGTCCTGTTCCGTTACCCAGCGGGACGAGTCTGGCGTTTGTCCGCCACAGGGCCCGACCAATCCCTGGAACACGTCCTCATTTGAGTCCAGGAGGCGGGAGCTGGAGGCGGAGAAACTGGAAGCACAGTGCAGGGAAGAAGATGGGGACAGAGGTCCTAATGTCAGTAAAACATCCCTCCCGTTAACTCTCTGTCCATTGGTTGTCATGGCAACACTGTCGCCCTCATTTAAAGTGGCCACGTCCACCTGATTAAGGTTGGTCTCGCTGCGGGTGACTGGACCGTCGCCTCTGGTGAAGCCCAAGTCCTGCCAAGCCCCCGGCGGGTGAAGCAATCCATCTGAGATAGTGTAGGTTGCAGCAGTAACACCTGCAGGCTGCGGAATGTGGCTGCCCATGCGTGAGAACAGCAGCCCGAGCCGTCTGAAGGAGTTCTTCTTGGAACTAGAGAAGCGTGAAAAGCGCCTCCAAGTCCGTGAAAGTGCAGGTCTTGCTGGAGCCACTGAGGACAGGGAAGAGGAGGGCGAGGGATTCTTCCTCAGTCCATTGATCTTTGGTTTATCTTCCCTGTACGCAGACGATGCTGCTGCTGTTGACGCCTCCATTCCGGAGATGGAGCGGAAAAGGGCGGAGACTCCGTAGGATGGATCTGAAGGCGTGATGGTTTTGAAAGAGACGCCTTTGGCCCCGACGCTGCTCCCATCACTGTGATAACAGGCCTCGCCATCGTCGCTGACCTCGTCTCGAAGCGTGGCCTCGCTGCTGGAGGAATAGTTCCGCCGGGGCGGCTTTCGGTTGCCGAGAAGATCCAAAACTTCGTAGCGAAAGCTGGAAATGTCCTGTTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU469837 True 1587 TUCP 0.47 2 1633030 1634969

Neighbor

gene id symbol gene type direction distance location
CI01000300_01571005_01611574 DACHB coding upstream 21456 1569612 ~ 1611574 (+)
CI01000300_01527830_01531871 NA coding upstream 101011 1527830 ~ 1532019 (+)
CI01000300_01519715_01526925 NA coding upstream 105879 1519579 ~ 1527151 (+)
CI01000300_01513060_01515885 EIF3F coding upstream 117145 1512905 ~ 1515885 (+)
CI01000300_01480400_01484276 NPY2RL coding upstream 148317 1479834 ~ 1484713 (+)
CI01000300_01753916_01754815 NA coding downstream 118947 1753916 ~ 1754980 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding downstream 136815 1771784 ~ 1783801 (+)
CI01000300_01801423_01807504 CNGA3 coding downstream 166454 1801423 ~ 1808125 (+)
CI01000300_01976057_01980856 NA coding downstream 341088 1976057 ~ 1981187 (+)
CI01000300_02313596_02320912 NA coding downstream 677546 2312515 ~ 2321088 (+)
G408909 NA non-coding upstream 147 1632453 ~ 1632883 (+)
G408894 NA non-coding upstream 82642 1546837 ~ 1550388 (+)
G408893 NA non-coding upstream 86792 1545968 ~ 1546238 (+)
G408892 NA non-coding upstream 87185 1545319 ~ 1545845 (+)
G408891 NA non-coding upstream 87758 1543907 ~ 1545272 (+)
G408942 NA non-coding downstream 49298 1684267 ~ 1684594 (+)
G408934 NA non-coding downstream 90455 1725424 ~ 1730427 (+)
G408929 NA non-coding downstream 100529 1735498 ~ 1744773 (+)
G408976 NA non-coding downstream 151525 1786494 ~ 1786724 (+)
G409006 NA non-coding downstream 243317 1878286 ~ 1878873 (+)
G408498 NA other upstream 612296 1017067 ~ 1020734 (+)
G408510 NA other upstream 655931 976600 ~ 977099 (+)
G409984 NA other downstream 1636716 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2266219 3901148 ~ 3902892 (+)
G410382 NA other downstream 2488729 4123698 ~ 4124416 (+)

Expression


Co-expression Network