G408929



Basic Information


Item Value
gene id G408929
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1735498 ~ 1744773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU469857
ACAGGTGTTTACCTACCTTTAACAGTGAGGCACATGGTCTTTCGTATGGGTCCTGACGGATACACTTTGAAGGAACAAATGTAGCAAGCCTCATCTTCAAATGTTGTGTTTTTGATCTCAATAGATGTTGAATTAAATGACGCACGAGTCAAAGTGACTTTACTGGCATACTCCTTATCCACATTATCCTGGAAGCGTTCGCTGAATGTAGCCAGAATTTGTACAGACTGATCCGCGCGCACCCGCTGCCAGGTGACATGTTTGACTCCAGACGGGTTTGGCAGCGTACAAGAGAATGAAGCATCCTGACCCACCACAACATTTGTGTCTCCTTGTCCTACAATTTCTGAAAGGTAAGCTGGGGAATAAAAAAAAAAAATGATGTTGTTATAAGCCTCCCACCATCTCCATCCAGTTTAGAAACATCCAGCCAGAGCAGTTTCAGATTTAGCCATAAAAATTAGGAGTCAATTACCGACCTCTTCTGAGCAAACTTAATATGATCAGAAGGCG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU469857 True 513 lncRNA 0.43 2 1735498 1744773

Neighbor


gene id symbol gene type direction distance location
CI01000300_01571005_01611574 DACHB coding upstream 123924 1569612 ~ 1611574 (+)
CI01000300_01527830_01531871 NA coding upstream 203479 1527830 ~ 1532019 (+)
CI01000300_01519715_01526925 NA coding upstream 208347 1519579 ~ 1527151 (+)
CI01000300_01513060_01515885 EIF3F coding upstream 219613 1512905 ~ 1515885 (+)
CI01000300_01480400_01484276 NPY2RL coding upstream 250785 1479834 ~ 1484713 (+)
CI01000300_01753916_01754815 NA coding downstream 9143 1753916 ~ 1754980 (+)
CI01000300_01772239_01783579 ATP1B1B, ATP1B1 coding downstream 27011 1771784 ~ 1783801 (+)
CI01000300_01801423_01807504 CNGA3 coding downstream 56650 1801423 ~ 1808125 (+)
CI01000300_01976057_01980856 NA coding downstream 231284 1976057 ~ 1981187 (+)
CI01000300_02313596_02320912 NA coding downstream 567742 2312515 ~ 2321088 (+)
G408934 NA non-coding upstream 5071 1725424 ~ 1730427 (+)
G408942 NA non-coding upstream 50904 1684267 ~ 1684594 (+)
G408909 NA non-coding upstream 102615 1632453 ~ 1632883 (+)
G408894 NA non-coding upstream 185110 1546837 ~ 1550388 (+)
G408893 NA non-coding upstream 189260 1545968 ~ 1546238 (+)
G408976 NA non-coding downstream 41721 1786494 ~ 1786724 (+)
G409006 NA non-coding downstream 133513 1878286 ~ 1878873 (+)
G409018 NA non-coding downstream 185458 1930231 ~ 1959590 (+)
G409028 NA non-coding downstream 218499 1963272 ~ 1964097 (+)
G409117 NA non-coding downstream 560296 2305069 ~ 2306889 (+)
G408910 NA other upstream 100529 1633030 ~ 1634969 (+)
G408498 NA other upstream 714764 1017067 ~ 1020734 (+)
G408510 NA other upstream 758399 976600 ~ 977099 (+)
G409984 NA other downstream 1526912 3271685 ~ 3272398 (+)
CI01000300_03901275_03902800 NA other downstream 2156415 3901148 ~ 3902892 (+)
G410382 NA other downstream 2378925 4123698 ~ 4124416 (+)

Expression



Co-expression Network