Item | Value |
---|---|
gene id | G408929 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000300 |
NCBI id | null |
chromosome length | 11740502 |
location | 1735498 ~ 1744773 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU469857 | True | 513 | lncRNA | 0.43 | 2 | 1735498 | 1744773 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000300_01571005_01611574 | DACHB | coding | upstream | 123924 | 1569612 ~ 1611574 (+) |
CI01000300_01527830_01531871 | NA | coding | upstream | 203479 | 1527830 ~ 1532019 (+) |
CI01000300_01519715_01526925 | NA | coding | upstream | 208347 | 1519579 ~ 1527151 (+) |
CI01000300_01513060_01515885 | EIF3F | coding | upstream | 219613 | 1512905 ~ 1515885 (+) |
CI01000300_01480400_01484276 | NPY2RL | coding | upstream | 250785 | 1479834 ~ 1484713 (+) |
CI01000300_01753916_01754815 | NA | coding | downstream | 9143 | 1753916 ~ 1754980 (+) |
CI01000300_01772239_01783579 | ATP1B1B, ATP1B1 | coding | downstream | 27011 | 1771784 ~ 1783801 (+) |
CI01000300_01801423_01807504 | CNGA3 | coding | downstream | 56650 | 1801423 ~ 1808125 (+) |
CI01000300_01976057_01980856 | NA | coding | downstream | 231284 | 1976057 ~ 1981187 (+) |
CI01000300_02313596_02320912 | NA | coding | downstream | 567742 | 2312515 ~ 2321088 (+) |
G408934 | NA | non-coding | upstream | 5071 | 1725424 ~ 1730427 (+) |
G408942 | NA | non-coding | upstream | 50904 | 1684267 ~ 1684594 (+) |
G408909 | NA | non-coding | upstream | 102615 | 1632453 ~ 1632883 (+) |
G408894 | NA | non-coding | upstream | 185110 | 1546837 ~ 1550388 (+) |
G408893 | NA | non-coding | upstream | 189260 | 1545968 ~ 1546238 (+) |
G408976 | NA | non-coding | downstream | 41721 | 1786494 ~ 1786724 (+) |
G409006 | NA | non-coding | downstream | 133513 | 1878286 ~ 1878873 (+) |
G409018 | NA | non-coding | downstream | 185458 | 1930231 ~ 1959590 (+) |
G409028 | NA | non-coding | downstream | 218499 | 1963272 ~ 1964097 (+) |
G409117 | NA | non-coding | downstream | 560296 | 2305069 ~ 2306889 (+) |
G408910 | NA | other | upstream | 100529 | 1633030 ~ 1634969 (+) |
G408498 | NA | other | upstream | 714764 | 1017067 ~ 1020734 (+) |
G408510 | NA | other | upstream | 758399 | 976600 ~ 977099 (+) |
G409984 | NA | other | downstream | 1526912 | 3271685 ~ 3272398 (+) |
CI01000300_03901275_03902800 | NA | other | downstream | 2156415 | 3901148 ~ 3902892 (+) |
G410382 | NA | other | downstream | 2378925 | 4123698 ~ 4124416 (+) |